| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3740982 = | NA (NA) | 8 (0.100) | 4/164 | NT | NA | noncoding (19/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470461 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
ACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3741087‑3740982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTT < NC_000913/4470461‑4470364 ACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGG < 2:387837/100‑1ACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGG < 1:2308141/100‑1 GCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCC < 1:1913658/100‑1 CCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCT > 1:1401743/1‑100 GAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT < 2:1401735/100‑1 TATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGG < 1:419272/100‑1 ATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:1601161/100‑1 ATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:1639364/100‑1 ATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:1832271/100‑1 ATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGC < 1:913675/100‑1 TGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATGCGCTACGCTTATCAGGCC < 2:320658/100‑1 TGCGGCGTAAACGCCTTATCCGGCCTACGAAGTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGCCTACATG < 2:1510119/99‑1 CGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGATGCGCTACGCTTATCAGGCCTACATGATT < 1:1533648/100‑1 cGTAGGCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACA > 2:1110360/2‑100 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACT > 1:2289997/1‑100 GCCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACT > 1:2012916/1‑100 CCTGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTC < 1:697882/100‑1 TGATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCAC > 1:964560/1‑100 GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACT < 1:925586/100‑1 GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACT < 2:1491351/100‑1 GATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACT > 2:677169/1‑100 ATGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTT > 2:1175266/1‑100 ACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAACGCCTTATCCGGCCTACAAATTCTTCCAAATTCAATATATTGCAGAAATCATGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3741087‑3740982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTACGTGATTCCTGCAATTTATTGAATTTGTTGGCCGGATAAGGCATTTACGCCGCATCCGGCATGAACAAAACTCACTT < NC_000913/4470461‑4470364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |