New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3898636	NA (NA)	8 (0.100)	7/162	NT	NA	noncoding (6/26 nt)	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 3898650	NA (NA)					noncoding (20/26 nt)	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences

AAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3898531‑3898636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATAA  <  NC_000913/3898650‑3898552                                                                                                                                                                                                               AAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAG                                                                                                           >  1:188353/1‑100  AAGCGTGGTCATTGTCAGGGTTATCTCTTCCGCTTTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGG                                                                                                          <  2:2025601/100‑1    GGGTGGTCATTGTCAGGGTTATCTCTTCCACTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGACTTTTCGTAGTTATTTAAATAATGAGAACAGGCC                                                                                                        <  2:1432812/100‑1     GGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCG                                                                                                       <  2:2117297/100‑1      GTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGG                                                                                                      <  1:1964982/100‑1      GTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGG                                                                                                      <  1:387579/100‑1        GGTCATTGTAAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGATGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCG                                                                                                       <  2:1235486/97‑1                            CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                <  1:1109550/100‑1                            CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACGGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                <  2:2202661/100‑1                             TTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCT                                                                               <  2:1717661/100‑1                              TCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTG                                                                              <  2:2383991/100‑1                               CCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT                                                                             <  1:1129885/100‑1                                 GCTGTCTCCAGTGCGGCAATCTAAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTC                                                                           <  2:2360016/100‑1                                  CTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCT                                                                          <  1:366998/100‑1                                               GGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAA                                                               <  2:447083/98‑1                                                                                                    GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG        >  1:1734511/1‑100                                                                                                    GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG        >  1:1288525/1‑100                                                                                                     GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       <  2:1223116/100‑1                                                                                                     GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA       >  2:307457/1‑100                                                                                                     GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGACGCAGTGGAGACAGCGGAAGA       >  2:2358412/1‑100                                                                                                      CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG      <  1:1181329/100‑1                                                                                                      CCGGATGTGTGAATTACGCGCCTGTCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCAGGGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG      <  2:1418240/100‑1                                                                                                       cgtATGTGTGAATTACGCTCCTGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGTAGACAGCGGAAGAGA     <  2:1077429/97‑1                                                                                                       CGGATGTGTGAATTACGCTCAGGACTGTTCTCATTATTTAAATAACTACGAAAAATCACCACACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGA     >  2:918000/1‑100                                                                                                          ATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATAA  <  1:906602/100‑1                                                                                                                                                                                                               AAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3898531‑3898636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATAA  <  NC_000913/3898650‑3898552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.