| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4628749 | 90 (1.050) | 6 (0.080) | 5/164 | NT | 6.9% | noncoding (55/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4628768 | 80 (1.010) | noncoding (74/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
AAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4628644‑4628749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTC < NC_000913/4628768‑4628671 AAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATG > 1:717512/1‑100 AAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGC < 1:1106251/100‑1 AAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGC < 1:710106/100‑1 AAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGC < 1:1893129/100‑1 AAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCC < 2:288195/100‑1 AAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCC < 2:1175435/100‑1 tctCCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCT < 2:239799/97‑1 AAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCT < 1:1966286/100‑1 AACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTG < 2:1223876/100‑1 CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTaga > 1:239801/1‑97 CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT > 1:2203424/1‑100 CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT < 1:2370019/100‑1 TTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGG < 1:1966594/100‑1 TGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGC < 2:2231504/100‑1 TGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGC < 1:69786/100‑1 gggTGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATT < 2:1657551/97‑1 ATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCAT < 1:154474/97‑1 TGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAG < 2:1940973/100‑1 gatCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTC < 1:2317020/97‑1 GCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTaa > 1:1031223/1‑98 CCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAA > 1:1531440/1‑100 CTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAAT > 1:650198/1‑100 TGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATT < 1:895976/100‑1 TGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATT > 1:44446/1‑100 GATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAgatc > 2:2316999/1‑96 ATAAGCCGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTC < 1:1666651/100‑1 AAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4628644‑4628749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTC < NC_000913/4628768‑4628671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |