| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4637524 = | 83 (0.970) | 5 (0.060) | 3/162 | NT | 6.6% | coding (829/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | 4637555 = | 66 (0.850) | coding (860/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GTAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4637629‑4637524‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgccgcCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATC > NC_000913/4637555‑4637653 GTAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTC > 1:1943637/1‑100GTAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTC < 2:1792550/100‑1GTAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTAAGAATCTTGTCAGTAAAACGAGCCACCACTTCCGCCGGCGGACCTTCGCGTAAAATTTC > 2:271169/1‑100 TAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCC > 1:1304149/1‑100 TAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCC > 2:2066982/1‑100 TAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCC < 2:1045417/100‑1 AACGGTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGGTGGCAGTATAACGAGCCACCACTTCCGGCGTCGGACCTTCGCGTAAAAGTTCC > 1:1298224/1‑99 ACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGGTGTCAGTCAAACGAGCTACCACTTCCGGCGGCGGACCTTCGGGTAAAATTTCCGC < 2:1474646/100‑1 TCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTA > 1:2176002/1‑100 CGGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAG > 1:671125/1‑99 gagGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAA > 1:1953034/4‑100 GGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAA > 1:1172701/1‑100 GGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAA > 1:1138826/1‑100 CCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGG > 2:258220/1‑100 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA > 2:631639/1‑100 GCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAG < 1:2226975/100‑1 GCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAG < 2:586068/100‑1 CCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAG < 2:1307492/99‑1 CGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAA < 2:1202015/100‑1 CCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATC > 1:1842659/1‑100 CCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATC < 2:491427/100‑1 GTAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4637629‑4637524‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgccgcCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAATC > NC_000913/4637555‑4637653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |