New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 395141	60 (0.700)	12 (0.150)	7/168	NT	17.1%	coding (1147/1158 nt)	ampH	D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase
	?	NC_000913	= 395159	60 (0.740)					coding (1129/1158 nt)	ampH	D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase

CAGAAGTTCTCGCTGCTTTGCGTAAAGGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/395038‑395141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggAATAAACCGTTGGTTATCCCCGCGTCCTGATTAATACTCTGAAGGCAAACGGTTGATAGCGACCAGTTTGCCTTTATTCATTTCGATATAGCCGCCTTT  <  NC_000913/395159‑395061                                                                                                                                                                                                             CAGAAGTTCTCGCTGCTTTGCGTAAAGGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACG                                                                                                         >  1:2279992/1‑100     AGTTCTCGCTGCTTTGCGTAAAGGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGG                                                                                                     <  1:1437344/100‑1     AGTTCTCGCTGCTTTGCGTAAAGGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGG                                                                                                     <  1:1343972/100‑1     AGTTCTCGCTGCTTTGCGTAAAGGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGG                                                                                                     <  2:496550/100‑1     AGTTCTCGCTGCTTTGCGTAAAGGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGG                                                                                                     <  2:2017079/100‑1                           GGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGGTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCC                                                                                <  2:436501/99‑1                           GGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCG                                                                               <  1:1582689/100‑1                           GGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCG                                                                               <  1:2274039/100‑1                           GGCGGCTATATCGAAATGAATAAAGGCAAACTGGGCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCG                                                                               <  1:1738132/100‑1                             CGGCTATATCGAAATGAATAAAGGCAAACTGGTCTCTATTAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCG                                                                               <  2:1345921/98‑1                             CGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCGCG                                                                             <  2:65971/100‑1                             CGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCGCG                                                                             <  1:1760057/100‑1                              GGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCGCGT                                                                            <  2:1003256/100‑1                                 TATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCGCGTCCT                                                                         <  1:573930/100‑1                                 TATATCGAAAGGAATAAAGGCAAACTGTTCGCTATCAACCGTGTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCGCGTCCT                                                                         <  2:1509234/100‑1                                     TCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCGCGTCCTGATT                                                                     <  1:38075/100‑1                                      CGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGGAATAAACCGTTGGTTATCCCCGCGTCCTGATTA                                                                    <  1:658261/100‑1                                                                                                     caGGAATAAACCGATGGTTATCCCCGCGTCCAGATTAATACTCTGAAGGCAAACGGTTGATAGCGACCAGTTTGCCTTTATTCATTTCGATATAGCCGCC     >  1:1606474/3‑100                                                                                                        GAATAAACCGTTGGTTATCCCCGCGTCCTGATTAATACTCTGAAGGCAAACGGTTGATAGCGACCAGTTTGCCTTTATTCATTTCGATATAGCCGCCTTT  >  1:556906/1‑100                                                                                                        GAATAAACCGTTGGTTATCCCCGCGTCCTGATTAATACTCTGAAGGCAAACGGTTGATAGCGACCAGTTTGCCTTTATTCATTTCGATATAGCCGCCTTT  >  2:306353/1‑100                                                                                                                                                                                                             CAGAAGTTCTCGCTGCTTTGCGTAAAGGCGGCTATATCGAAATGAATAAAGGCAAACTGGTCGCTATCAACCGTTTGCCTTCAGAGTATTAATCAGGACGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/395038‑395141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggAATAAACCGTTGGTTATCCCCGCGTCCTGATTAATACTCTGAAGGCAAACGGTTGATAGCGACCAGTTTGCCTTTATTCATTTCGATATAGCCGCCTTT  <  NC_000913/395159‑395061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.