| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 815643 | NA (NA) | 6 (0.080) | 5/166 | NT | NA | noncoding (59/97 nt) | RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 815689 | NA (NA) | intergenic (+142/+50) | uvrB/ybhK | exision nuclease of nucleotide excision repair, DNA damage recognition component/putative CofD superfamily transferase | |||||
CATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/815540‑815643‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTAGCGC < NC_000913/815689‑815592 CATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTG < 1:19653/100‑1CATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTG > 1:2021746/1‑100 TCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCG < 1:1802258/100‑1 TCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCG > 2:49173/1‑100 TCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCG < 1:2186965/100‑1 GTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG < 1:2324255/100‑1 GTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG < 2:1897286/100‑1 AACAGTATAGCGAAGAAGACTGATGACAAACAGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCG < 2:285746/96‑1 ggGAAGAAGACTGCTGACAAACGAAAGACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGggtcgta < 2:1207337/94‑8 GAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATC > 1:931405/1‑100 TCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAAT < 1:278087/100‑1 CCTACATTTTCTCCGCAATATATTGAATTTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATT < 2:419510/100‑1 CCTACATTTTCTCCGCAATATATTGAATTTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATT < 2:657433/100‑1 CTACATTTTCTCCGCAATATATTGAATTTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTG < 2:931403/100‑1 ACATTTTCTCCGCAATATATTGAATTTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCG < 1:1099345/100‑1 TGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTA < 1:1988423/100‑1 TGCGCGTTGGTGATGGCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTA < 2:1856247/100‑1 GCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTAG < 1:520887/100‑1 GCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTA > 2:1799797/1‑99 CGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTA < 2:972928/98‑1 CGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTAGCGC > 2:1344671/1‑100 CGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTAGCGC < 1:1971386/100‑1 CATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/815540‑815643‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcgTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACCGCGCAAATTCAATATATTGCGGAGAAAATGTAGGCCTGATAAGCGTAGCGC < NC_000913/815689‑815592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |