New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2888334 =	NA (NA)	6 (0.080)	4/164	NT	NA	noncoding (1/37 nt)	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2888367 =	NA (NA)					noncoding (34/37 nt)	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences

GCGGGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2888437‑2888334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTT  >  NC_000913/2888367‑2888463                                                                                                                                                                                                           GCGGGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATGGGTGGGACTAACCATCAGCCCGGTCCTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATC                                                                                                       >  2:2221524/1‑100   GGGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAG                                                                                                     <  2:715244/100‑1     GCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGC                                                                                                   >  1:411863/1‑100                                                                     TAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGA                                   >  1:1832223/1‑100                                                                       GGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATG                                 >  1:900515/1‑100                                                                        GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGCCCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCTAGCACCGGGCGACTGA                                   >  2:1221759/1‑97                                                                        GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGC                                >  1:580595/1‑100                                                                         CCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCATAAATCACGCACCGGATAGAGCACCGGGCGAATGATGCC                               >  2:509358/1‑100                                                                         CCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCC                               >  1:1055141/1‑100                                                                                                  ATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAG      >  2:323666/1‑100                                                                                                   TCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGC     >  1:1464312/1‑100                                                                                                     AGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCT   >  1:1842689/1‑100                                                                                                     AGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCC    >  1:1847021/1‑99                                                                                                      GGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTT  >  1:1579871/1‑100                                                                                                                                                                                                           GCGGGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2888437‑2888334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTT  >  NC_000913/2888367‑2888463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.