New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4601307 =100 (1.170)6 (0.070) 5/168 NT 5.8% coding (211/540 nt) dnaT DNA biosynthesis protein (primosomal protein I)
?NC_000913 4601335 = 102 (1.260)coding (183/540 nt) dnaT DNA biosynthesis protein (primosomal protein I)
Rejected: Frequency below cutoff threshold.

Only 100 of 126 total aligned reads displayed.

GGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCA  >  NC_000913/4601208‑4601404
                                                                                                   |                                                                                                 
ggCGGATAAAATCTGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATc                                                                                                   <  2:2226505/100‑1 (MQ=255)
ggCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATc                                                                                                   <  2:306981/100‑1 (MQ=255)
 gcggtgtggttgccgtatttgctaacaatgccccggcgttttatgccgtcacgcctgcacgcctggctgaactgctggcgctggaagaaaagctggcgcg                                                                                                  >  1:2101032‑M1/99‑100 (MQ=255)
 gCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCg                                                                                                  <  1:1033883/100‑1 (MQ=255)
 gCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCg                                                                                                  <  2:561100/100‑1 (MQ=255)
  cggtgtggttgccgtatttgctaacaatgccccggcgttttatgccgtcacgcctgcacgcctggctgaactgctggcgctggaagaaaagctggcgCGt                                                                                                 <  1:1205732‑M1/3‑1 (MQ=255)
  cGGATAAAATCGGCATCGGGATGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTACTGATAGAGTTGATCGt                                                                                                 >  2:1523413/1‑100 (MQ=255)
     aTAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCa                                                                                              <  1:451360/100‑1 (MQ=255)
     aTAAAATCGCCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTcc                                                                                               <  2:2323787/99‑1 (MQ=255)
      tAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCag                                                                                             >  2:300609/1‑100 (MQ=255)
      tAAAATCGGCATCGGGTTGCCAGGCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCag                                                                                             <  1:2091228/100‑1 (MQ=255)
       aaaaTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCaga                                                                                            <  1:2166172/100‑1 (MQ=255)
        aaaTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTTCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGTTAGGGTTGATCGTCCagag                                                                                           >  2:596545/1‑100 (MQ=255)
        aaaTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCagag                                                                                           >  1:1456627/1‑100 (MQ=255)
        aaaTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCagag                                                                                           >  1:458099/1‑100 (MQ=255)
          aTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCg                                                                                         >  2:1312724/1‑100 (MQ=255)
          aTCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCg                                                                                         <  1:1125203/100‑1 (MQ=255)
           tCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGa                                                                                        <  1:100717/100‑1 (MQ=255)
            cGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGAc                                                                                       <  1:1972558/100‑1 (MQ=255)
               cATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATc                                                                                    >  2:1155968/1‑100 (MQ=255)
                aTCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCg                                                                                   <  1:879783/100‑1 (MQ=255)
                  cGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCt                                                                                 <  1:412108/100‑1 (MQ=255)
                         ccAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGa                                                                          >  1:1717848/1‑100 (MQ=255)
                         ccAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGa                                                                          <  2:1729475/100‑1 (MQ=255)
                          caatgccccggcgttttatgccgtcacgcctgcacgcctggctgaactgctggcgctggaagaaaagctggcgCGTCCAGAGCGACATCGCTTCCCGGAc                                                                         >  1:2139756‑M1/74‑100 (MQ=255)
                          cAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGAc                                                                         >  1:2274679/1‑100 (MQ=255)
                           aatgccccggcgttttatgccgtcacgcctgcacgcctggctgaactgctggcgctggaagaaaagctggcgCGTCCAGAGCGACATCGCTTCCCGGAcg                                                                        >  2:157526‑M1/73‑100 (MQ=255)
                           aGTCCGGATACATGGCGAATTTGCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACAGCGCTTCCCGGAcg                                                                        <  2:234730/100‑1 (MQ=255)
                               ccccggcgttttatgccgtcacgcctgcacgcctggctgaactgctggcgctggaagaaaagctggcgCGTCCAGAGCGACATCGCTTCCCGGACGCGcc                                                                    >  2:1752329‑M1/69‑100 (MQ=255)
                               ccccggcgttttatgccgtcacgcctgcacgcctggctgaactgctggcgctggaagaaaagctggcgCGTCCAGAGCGACATCGCTTCCCGGACGCGcc                                                                    >  1:2139124‑M1/69‑100 (MQ=255)
                                cccggcgttttatgccgtcacgcctgcacgcctggctgaactgctggcgctggaagaaaagctggcgCGTCCAGAGCGACATCGCTTCCCGGACGCGCCa                                                                   >  1:773449‑M1/68‑100 (MQ=255)
                                  aTACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGc                                                                 <  1:540549/100‑1 (MQ=255)
                                   tACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAg                                                                  <  2:2155380/98‑1 (MQ=255)
                                   tACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCt                                                                >  1:1887909/1‑100 (MQ=255)
                                   cccATGGGGAAATTCGCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGc                                                                 >  2:2087250/3‑99 (MQ=255)
                                    aCATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCtt                                                               <  1:227357/100‑1 (MQ=255)
                                     cATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCttt                                                              >  1:180423/1‑100 (MQ=255)
                                     cATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCttt                                                              <  1:830821/100‑1 (MQ=255)
                                       tGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttc                                                            >  2:2229249/1‑100 (MQ=255)
                                       tGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttc                                                            <  1:1139704/100‑1 (MQ=255)
                                       tGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttc                                                            <  1:62281/100‑1 (MQ=255)
                                       tGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttc                                                            <  1:1997513/100‑1 (MQ=255)
                                        ggCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttct                                                           >  1:1517300/1‑100 (MQ=255)
                                        ggCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttct                                                           >  1:1578767/1‑100 (MQ=255)
                                        ggCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttct                                                           >  1:1776432/1‑100 (MQ=255)
                                        ggCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttct                                                           >  2:1882755/1‑100 (MQ=255)
                                        ggCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttct                                                           >  2:407140/1‑100 (MQ=255)
                                        ggCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttct                                                           >  1:1856803/1‑100 (MQ=255)
                                         gCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttctt                                                          <  1:334697/100‑1 (MQ=255)
                                         gCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttctt                                                          <  1:569448/100‑1 (MQ=255)
                                         gCGAAGTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTttctt                                                          <  2:326088/100‑1 (MQ=255)
                                           gAACTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTcc                                                        <  1:1075902/100‑1 (MQ=255)
                                              tttCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAgc                                                     <  1:1353069/100‑1 (MQ=255)
                                                 ccccATGGGTACAGCCAAGGGAGCGGCTTGCGGTTCCTGATAGTGTTCATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCCTTTCTTCCAgcgc                                                   <  2:1476424/99‑1 (MQ=255)
                                                 ccccATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGcc                                                  >  2:741241/1‑100 (MQ=255)
                                                  cccATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCca                                                 <  2:199966/100‑1 (MQ=255)
                                                  cccATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCca                                                 >  2:2089069/1‑100 (MQ=255)
                                                   ccATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCcag                                                >  2:1366594/1‑100 (MQ=255)
                                                    cATGGGTACAGCAACGGGAGCGGCTTGCGGTGCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCcagc                                               <  2:169237/100‑1 (MQ=255)
                                                      tGGGTACGGCAACGGGCGCGGGTTGCGGTCCCTGATGGAGTTGATCGTCCAGAGCGACATCGGTTCCCGGGCGCGCCAGCTTCTCTTCCAGCGCgagta                                              <  2:2387824/99‑3 (MQ=255)
                                                      tGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCcagcag                                             >  2:1424927/1‑100 (MQ=255)
                                                      tGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCcagcag                                             <  1:778522/100‑1 (MQ=255)
                                                        ggTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTACAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGtt                                           >  2:1849901/1‑100 (MQ=255)
                                                         gTACAGCAACGGGAGCGGCTTGCTGTTCCTGATAGAGTTGATCGTCTATAGCGACATCGCTTCCAGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGtt                                           <  2:654348/99‑1 (MQ=255)
                                                          tACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCa                                         >  2:493759/1‑100 (MQ=255)
                                                          tACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGAGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCa                                         >  2:101664/1‑100 (MQ=255)
                                                            cAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGc                                       >  1:2177742/1‑100 (MQ=255)
                                                             aGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGcc                                      <  1:695910/100‑1 (MQ=255)
                                                              gCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGc                                       >  2:1787165/1‑98 (MQ=255)
                                                              gCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGAACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCca                                     <  2:522692/100‑1 (MQ=255)
                                                               cAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcag                                    >  2:1554466/1‑100 (MQ=255)
                                                                aaCGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcagg                                   <  1:1230067/100‑1 (MQ=255)
                                                                aaCGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcagg                                   >  2:493290/1‑100 (MQ=255)
                                                                 aCGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggc                                  <  1:1969219/100‑1 (MQ=255)
                                                                  cGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcg                                 <  2:622114/100‑1 (MQ=255)
                                                                  cGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcg                                 <  1:1039337/100‑1 (MQ=255)
                                                                          gCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCcaggcgtgcaggcg                         >  1:1130756/1‑100 (MQ=255)
                                                                                ggTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGATTTTCTTCAAGCGCCAGCCGTTCAGCCAGGCGTGAAGGCGTGACg                    >  2:2161774/1‑99 (MQ=255)
                                                                                 gTTCCTGATAGAGGTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGc                  <  2:1213898/100‑1 (MQ=255)
                                                                                   tCCTGATAGAGTTGATCGTCCAGGGCGACATCGCTTCTCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGc                  <  2:627167/98‑1 (MQ=255)
                                                                                   tCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCAt                >  1:1169161/1‑100 (MQ=255)
                                                                                    ccTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCCGCGCCCGCTGTTCAGCCAGGCGTGCAGGCGTGTCGGCAt                >  1:1998605/1‑99 (MQ=255)
                                                                                    ccTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCAt                <  2:507958/99‑1 (MQ=255)
                                                                                     cTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATaa              >  2:1867041/1‑100 (MQ=255)
                                                                                     cTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATaa              <  1:124328/100‑1 (MQ=255)
                                                                                      tGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATaaa             >  2:1327687/1‑100 (MQ=255)
                                                                                       gATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATacaa            >  2:1205725/1‑100 (MQ=255)
                                                                                       gATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATaaaa            >  2:158358/1‑100 (MQ=255)
                                                                                        ccgatcttGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAAc           <  2:2343908/94‑1 (MQ=255)
                                                                                        aTAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAAc           <  2:136460/100‑1 (MQ=255)
                                                                                           gagTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGcc        >  1:885760/1‑100 (MQ=255)
                                                                                            agTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCg       <  1:1312731/100‑1 (MQ=255)
                                                                                             gTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCgg      >  1:207068/1‑100 (MQ=255)
                                                                                             gTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCgg      >  2:1619684/1‑100 (MQ=255)
                                                                                               tGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAAcagatcgg    >  1:2343929/1‑93 (MQ=255)
                                                                                               tGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCgggg    <  1:1867799/100‑1 (MQ=255)
                                                                                                gATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTGCAGCGCCAGCAGTTCAGCCCGGCGTGCAGGCGTGACGGCATAAAAAGCCgggg    >  2:1612735/1‑99 (MQ=255)
                                                                                                gATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGc   >  2:1903085/1‑100 (MQ=255)
                                                                                                gATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGc   >  2:673350/1‑100 (MQ=255)
                                                                                                 aTCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCa  <  1:2325702/100‑1 (MQ=255)
                                                                                                   |                                                                                                 
GGCGGATAAAATCGGCATCGGGTTGCCAGTCCGGATACATGGCGAATTTCCCCATGGGTACAGCAACGGGAGCGGCTTGCGGTTCCTGATAGAGTTGATCGTCCAGAGCGACATCGCTTCCCGGACGCGCCAGCTTTTCTTCCAGCGCCAGCAGTTCAGCCAGGCGTGCAGGCGTGACGGCATAAAACGCCGGGGCA  >  NC_000913/4601208‑4601404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.