New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 213635NA (NA)4 (0.050) 3/164 NT NA noncoding (4/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 213668 NA (NA)noncoding (37/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences

CTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTT  >  NC_000913/213537‑213733
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cTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAg                                                                                                   <  2:363758‑M1/100‑2 (MQ=255)
 tGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgc                                                                                                  >  2:1265432‑M1/1‑98 (MQ=255)
    ttGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgg                                                                                               <  1:2032586‑M1/100‑6 (MQ=255)
     tGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgga                                                                                              >  2:274235‑M1/1‑94 (MQ=255)
     tGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgga                                                                                              <  1:1376249‑M1/100‑7 (MQ=255)
     tGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgg                                                                                               >  2:1177732‑M1/1‑94 (MQ=255)
      gcggcgGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggat                                                                                             <  2:32283‑M1/100‑8 (MQ=255)
       cggcggCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATa                                                                                            <  1:1068765/100‑1 (MQ=255)
        ggcggcAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGACTGGCGTCAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATaa                                                                                           >  2:1516743/1‑100 (MQ=255)
          cggcAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGa                                                                                         >  2:1694005/1‑100 (MQ=255)
           ggcAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGACAGCCGGATAAGAc                                                                                        <  1:1603367/100‑1 (MQ=255)
           ccgatctgTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGAc                                                                                        <  2:1820110/93‑1 (MQ=255)
             cAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGc                                                                                      >  1:1303410/1‑100 (MQ=255)
              aGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCa                                                                                     <  2:2373936/100‑1 (MQ=255)
               ggggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCAt                                                                                    >  1:2136560/1‑100 (MQ=255)
                  gTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGAcagatcgg                                                                                 >  1:1820124/1‑93 (MQ=255)
                    aTTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAAc                                                                               <  1:558274/100‑1 (MQ=255)
                    aTTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAAc                                                                               <  1:1797818/100‑1 (MQ=255)
                       tgtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTc                                                                            <  1:6031/100‑1 (MQ=255)
                        gtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGTTAAGACGCATCAAACGTCg                                                                           >  1:1792155/1‑100 (MQ=255)
                        gtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGCTAAGACGCATCAAACGTCg                                                                           >  1:2254481/1‑100 (MQ=255)
                         tgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGc                                                                          >  1:1572429/1‑100 (MQ=255)
                          gACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCA                                                                         >  2:2361334‑M2/1‑100 (MQ=255)
                          gACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCA                                                                         <  2:1401084‑M2/100‑1 (MQ=255)
                          gACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCA                                                                         <  2:393492‑M2/100‑1 (MQ=255)
                            cGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATC                                                                       <  1:1756142‑M2/100‑1 (MQ=255)
                             gCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCC                                                                      <  1:1206971‑M2/100‑1 (MQ=255)
                              cAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCG                                                                     <  1:2047743‑M2/100‑1 (MQ=255)
                              cAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTATGGCAGAAAACGCTTAGTTAAGTGAAAGACGGATAAGACGCATCAAACGTCGCATCCG                                                                     <  1:1065828‑M2/100‑1 (MQ=255)
                               aagaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGG                                                                    <  2:1093887‑M2/100‑1 (MQ=255)
                               aagaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGG                                                                    <  1:28615‑M2/100‑1 (MQ=255)
                                agaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggc                                                                   <  1:2029269‑M1/100‑34 (MQ=255)
                                   agGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggcttt                                                                <  2:418259‑M1/100‑37 (MQ=255)
                                   agGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggcttt                                                                <  1:1873408‑M1/100‑37 (MQ=255)
                                   agGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGaa                                                                <  2:74704/100‑1 (MQ=255)
                                   agGTGTGGCTGAAGGTGAGAATGGCGTAACTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCTGGATAAGACGCATCAAACGTCGCATCCGGCGaa                                                                <  2:1432106/100‑1 (MQ=255)
                                     gtgtGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAg                                                              <  1:444135/100‑1 (MQ=255)
                                      tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggctttcac                                                             <  1:491687‑M1/100‑40 (MQ=255)
                                      tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGt                                                             >  2:1259137/1‑100 (MQ=255)
                                       gtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTc                                                            <  2:684174/100‑1 (MQ=255)
                                        tgGCTGAAGGTGAGAACGGCGTAAGTTTTGTCTCGCAGAAAACGCTTAGTTAAGTGAAAGCCGTATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCa                                                           <  2:1394329/100‑1 (MQ=255)
                                           cTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATc                                                        >  1:2247667/1‑100 (MQ=255)
                                            tGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCa                                                       <  2:2286229/100‑1 (MQ=255)
                                              aaGGTGAGAATGGCGTAAGTTTTGTCTGGCAGGAAACGCATAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAgg                                                     <  2:1672174/100‑1 (MQ=255)
                                              aaGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGCTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAgg                                                     <  2:1521523/100‑1 (MQ=255)
                                               aGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGa                                                    <  2:343333/100‑1 (MQ=255)
                                                ggTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAt                                                   <  2:1476049/100‑1 (MQ=255)
                                                ggTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTAAGTTAAGTGAAAGCCGGATAAGACTCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAt                                                   >  2:680167/1‑100 (MQ=255)
                                                 gTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAtt                                                  >  2:2377524/1‑100 (MQ=255)
                                                  tGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTc                                                 <  1:101012/100‑1 (MQ=255)
                                                    agaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGc                                               <  1:2377545/100‑1 (MQ=255)
                                                     gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                              >  1:1069111/1‑100 (MQ=255)
                                                     gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                              >  1:2169173/1‑100 (MQ=255)
                                                     gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                              >  1:2156429/1‑100 (MQ=255)
                                                       aTGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTa                                            <  1:1783109/100‑1 (MQ=255)
                                                         ggCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacc                                          <  1:907629/100‑1 (MQ=255)
                                                         ggCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacc                                          <  1:1941953/100‑1 (MQ=255)
                                                         ggCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCAAAAGTCAATCAGGATTCGCTTacc                                          >  2:2052433/1‑100 (MQ=255)
                                                          gCGTAAGTTTTTTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGATAGTTAATCAGGATTCGCTTacc                                          <  2:481184/99‑1 (MQ=255)
                                                           cGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccac                                        >  2:1039158/1‑100 (MQ=255)
                                                             tAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccacca                                      >  2:1697553/1‑100 (MQ=255)
                                                               aGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccaccacc                                    <  2:324480/100‑1 (MQ=255)
                                                               aGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccaccacc                                    <  1:2078946/100‑1 (MQ=255)
                                                                gTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAATGCCGGATAAGACGCATCAAACGTCCCATCCGGCGAAAGTCAATCAGGAATCGCTTcccaccac                                     >  2:1826863/1‑98 (MQ=255)
                                                                gTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCAACAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCg                                   >  2:982395/1‑100 (MQ=255)
                                                                   ttGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTAc                                >  2:1485496/1‑100 (MQ=255)
                                                                    tGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTAcc                               <  1:1900533/100‑1 (MQ=255)
                                                                     gTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCg                              <  1:1581726/100‑1 (MQ=255)
                                                                     gTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCg                              >  1:1933762/1‑100 (MQ=255)
                                                                       cTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTGAATCAGGATTCGCTTACCACCACCGTACCGAt                            <  2:683775/100‑1 (MQ=255)
                                                                         ggCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAttt                          >  1:2297445/1‑100 (MQ=255)
                                                                          gCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTc                         >  1:883123/1‑100 (MQ=255)
                                                                             gAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCgg                      >  1:2230566/1‑100 (MQ=255)
                                                                               aaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGt                    >  1:2042941/1‑100 (MQ=255)
                                                                               aaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGt                    <  1:2150098/100‑1 (MQ=255)
                                                                                  cGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                 >  2:1403168/1‑100 (MQ=255)
                                                                                  cGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                 >  2:544869/1‑100 (MQ=255)
                                                                                  cGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                 <  1:1702035/100‑1 (MQ=255)
                                                                                  cGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                 <  1:1888226/100‑1 (MQ=255)
                                                                                   gCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCt                <  2:1097731/100‑1 (MQ=255)
                                                                                   gCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCCGGTgg                  >  2:2289708/1‑98 (MQ=255)
                                                                                    cTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTa               >  2:1958010/1‑100 (MQ=255)
                                                                                     ttAGTTAAGTGAAAGCCGAAAAAGACGCATCAAACGCCGCACCCGGCAAAAGTCAATCAGGATCCGCTAACCACCACCGTACCGATTTCCGGTTGGCTa               <  2:1359208/99‑1 (MQ=255)
                                                                                     ttAGTGTAGTGAAGGCGGGTTAAGTCGTATCAATCGTTGCATCTGTTGAAAGTCAATTAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                 <  2:1288194/97‑1 (MQ=255)
                                                                                       aGTTAAGAGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAg            >  1:1251056/1‑100 (MQ=255)
                                                                                        gTTCAGTGGCAGCCGGATAAGACGCATCAACAGTCGCATCCGGCGAGAGTCGATCAGGATTCGCTTACCACCCCCGTAGCGATCCCCGGGTGGCtc               >  2:1066253/1‑95 (MQ=255)
                                                                                        gTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCACTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGc           >  2:777300/1‑100 (MQ=255)
                                                                                          tAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTg         >  1:742782/1‑100 (MQ=255)
                                                                                           aaGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTgg        <  1:574244/100‑1 (MQ=255)
                                                                                            aGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGt       >  1:2181028/1‑100 (MQ=255)
                                                                                            aGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGt       >  1:202467/1‑100 (MQ=255)
                                                                                             gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccaca      <  1:491687‑M2/100‑62 (MQ=255)
                                                                                               gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt    >  1:1096212/1‑100 (MQ=255)
                                                                                               gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt    >  2:827832/1‑100 (MQ=255)
                                                                                                aaaGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacacct   <  2:418259‑M2/100‑65 (MQ=255)
                                                                                                aaaGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacacct   <  1:1873408‑M2/100‑65 (MQ=255)
                                                                                                aaaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtt   <  2:169972/100‑1 (MQ=255)
                                                                                                 aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt  >  1:1110422/1‑100 (MQ=255)
                                                                                                 aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt  <  2:2369343/100‑1 (MQ=255)
                                                                                                  |                                                                                                  
CTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTT  >  NC_000913/213537‑213733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.