BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	610135 =	NA (NA)	5 (0.060)	4/164	NT	NA	noncoding (19/98 nt)	RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	= 4470461	NA (NA)	5 (0.060)	4/164	NT	NA	noncoding (81/88 nt)	RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 111 total aligned reads displayed.

AGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTG  >  NC_000913/610036‑610233

aGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa                                                                                                     >  1:1443160/1‑100 (MQ=255)

aGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa                                                                                                     <  2:1335520/100‑1 (MQ=255)

  cGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATc                                                                                                   >  2:2093048/1‑100 (MQ=255)

    tATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg                                                                                                 >  1:605998/1‑100 (MQ=255)

     aTGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg                                                                                                <  2:46747/100‑1 (MQ=255)

       gTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGcc                                                                                              <  2:502209/100‑1 (MQ=255)

       gTCCGGCAAAGGGGAGGGAGATATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGc                                                                                               >  2:1457818/1‑99 (MQ=255)

          cGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc                                                                                           >  1:578235/1‑100 (MQ=255)

           ggCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa                                                                                          >  1:60733/1‑100 (MQ=255)

           ggCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa                                                                                          <  2:761154/100‑1 (MQ=255)

           ggCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa                                                                                          >  2:2175965/1‑100 (MQ=255)

            gCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACa                                                                                          <  2:265769/99‑1 (MQ=255)

             cAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATg                                                                                        >  1:452155/1‑100 (MQ=255)

             cAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATg                                                                                        >  1:1334839/1‑100 (MQ=255)

             cAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATg                                                                                        >  1:1483438/1‑100 (MQ=255)

              aaaGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATgg                                                                                       >  2:762456/1‑100 (MQ=255)

               cgatctagggaggTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑t                                                                                     <  1:1217152/94‑1 (MQ=255)

               aaGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑t                                                                                     >  2:683298/1‑100 (MQ=255)

                 ggggAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑Tcc                                                                                   <  1:1741803/100‑1 (MQ=255)

                 ggggAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑Tcc                                                                                   <  2:877174/100‑1 (MQ=255)

                 ggggAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑Tcc                                                                                   >  2:884374/1‑100 (MQ=255)

                 ggggAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑Tcc                                                                                   <  1:2184481/100‑1 (MQ=255)

                   ggagggagGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTg                                                                                 <  2:2054112/100‑1 (MQ=255)

                   ggagagagGTATGCGTAGTTTTCATATCGACCATATTTGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATAAGGCCAACATGG‑Tcat                                                                                  >  2:924682/1‑97 (MQ=21)

                     agggaggTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑tagatcg                                                                               >  2:1217145/1‑94 (MQ=255)

                      gggaggTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCaa                                                                              >  2:1185257/1‑100 (MQ=255)

                         agacaTGCGTGGTTTTAAAATCGACCATATTCGAGCATGCTGACAAACGCAAACAAGCCTGATGCACAACGCTTATCAGGCCTACCTGG‑TCCTGCAata                                                                            <  2:1542555/95‑1 (MQ=16)

                          ggTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAatat                                                                           >  1:86958/1‑99 (MQ=255)

                           gTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAatatat                                                                         <  2:2244/100‑1 (MQ=255)

                              tGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGa                                                                      >  1:2232873/1‑100 (MQ=255)

                              tGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGa                                                                      >  2:487004/1‑100 (MQ=255)

                               gCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGaa                                                                     >  1:1079086/1‑100 (MQ=255)

                                cGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAAt                                                                    >  1:2337506/1‑100 (MQ=255)

                                cGTAGTTTTCATATCGACCATATTCGAGACTGAAGAAAAACAAAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAAt                                                                    <  2:1951097/100‑1 (MQ=25)

                                  tAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTg                                                                  <  1:1078381/100‑1 (MQ=255)

                                    gTTTCCATACCGACCATATTCGAGACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCCGGCCTACATGG‑TCCTGCAATATATTGAATTg                                                                  <  2:2306052/98‑1 (MQ=18)

                                     ttttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCa                                                               <  1:831874/100‑1 (MQ=255)

                                       ttCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAg                                                             <  2:174218/100‑1 (MQ=255)

                                          atatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGAtt                                                          >  2:154289/1‑100 (MQ=255)

                                          atatCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGAt                                                           >  1:1897468/1‑99 (MQ=255)

                                            atCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGAtttt                                                        >  1:1075846/1‑100 (MQ=255)

                                            atCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGAtttt                                                        >  1:1313123/1‑100 (MQ=255)

                                             tCGACCATATTCGAGACTGATGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGAtttt                                                        >  2:190330/1‑99 (MQ=255)

                                              cGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTg                                                      <  2:453818/100‑1 (MQ=255)

                                              cGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTg                                                      >  1:2067807/1‑100 (MQ=255)

                                              cGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTg                                                      >  1:569982/1‑100 (MQ=255)

                                              cGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTg                                                      <  2:30697/100‑1 (MQ=255)

                                              cGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTg                                                      <  1:156259/100‑1 (MQ=255)

                                              cGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCCACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTg                                                      >  2:1300941/1‑100 (MQ=255)

                                                    tatTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGc                                                 <  2:784085/99‑1 (MQ=255)

                                                     atTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCg                                               >  2:503038/1‑100 (MQ=255)

                                                     atTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCg                                               >  1:560150/1‑100 (MQ=255)

                                                      ttCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCgg                                              <  1:275729/100‑1 (MQ=255)

                                                       tCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCgg                                              >  2:425646/1‑99 (MQ=255)

                                                       tCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGa                                             >  2:425655/1‑100 (MQ=255)

                                                        cGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGAt                                            <  2:1720004/100‑1 (MQ=255)

                                                         gagaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATa                                           >  1:1272091/1‑100 (MQ=255)

                                                          agaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATaa                                          >  1:19847/1‑100 (MQ=255)

                                                           gaCTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAg                                         >  2:1685022/1‑100 (MQ=255)

                                                              tgatgaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCg                                      >  2:186114/1‑100 (MQ=255)

                                                                 tgaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTc                                   >  2:1198254/1‑100 (MQ=255)

                                                                 tgaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTc                                   <  2:1838444/100‑1 (MQ=255)

                                                                 tgaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATGGAATTAGCAAGATTTTTGTAGGCCGGATAAGGCGTTc                                   >  2:1607067/1‑100 (MQ=255)

                                                                  gaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCa                                  <  2:81545/100‑1 (MQ=255)

                                                                    cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCAcg                                >  1:1021138/1‑100 (MQ=255)

                                                                    cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCAcg                                >  1:650838/1‑100 (MQ=255)

                                                                      aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCAcgcc                              <  1:1300948/100‑1 (MQ=255)

                                                                       aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCAcgccg                             <  1:1365777/100‑1 (MQ=255)

                                                                       aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCAcgccg                             <  1:1155230/100‑1 (MQ=255)

                                                                       aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCAcgccg                             <  1:86907/100‑1 (MQ=255)

                                                                        cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCAcgccgc                            <  1:1067160/100‑1 (MQ=255)

                                                                          cAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                          >  2:80797/1‑100 (MQ=255)

                                                                           aaaaCTGCCTGGTGCGCTACGCTTATCAGGCGTACAAGGTTTCTGCAATATATTGAATTAGCACGA‑TTTTGTAGGCCGGATGCGGCGTAAAcgccttatc                         <  2:765481/100‑6 (MQ=17)

                                                                               cTGCTTGATGCGCTACACTTATCAGACCTACATGG‑TCCTGCAATATATTGAATTGGCACGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc                        >  2:345702/1‑97 (MQ=17)

                                                                               cTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                     <  2:1653588/100‑1 (MQ=18)

                                                                               aggcctgataagcgtagcgcATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                     <  1:719693‑M1/80‑1 (MQ=255)

                                                                                ggcctgataagcgtagcgcATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                    <  1:2033694‑M1/81‑1 (MQ=255)

                                                                                 gcctgataagcgtagcgcCTCAGGCCTACATGG‑TCCTGCAATATATTGAACTGGTAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCggctt                   <  2:1080046‑M1/82‑3 (MQ=255)

                                                                                 gcctgataagcgtagcgcATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCGGCATCCGGCa                    <  2:1692433‑M1/81‑1 (MQ=255)

                                                                                 gCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt                   >  1:1902715/1‑100 (MQ=255)

                                                                                  cctgataagcgtagcgcATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCCGGCATg                  <  1:2314608‑M1/83‑1 (MQ=255)

                                                                                  ccTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt                   <  1:2321299/99‑1 (MQ=255)

                                                                                   cTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa                 >  1:26202/1‑100 (MQ=255)

                                                                                   cTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa                 >  2:350906/1‑100 (MQ=255)

                                                                                   cTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa                 >  1:2135968/1‑100 (MQ=255)

                                                                                   cTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGA‑TTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa                <  1:727379/100‑1 (MQ=255)

                                                                                     gATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAac               <  1:1102914/100‑1 (MQ=255)

                                                                                     gATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAac               <  2:1711271/100‑1 (MQ=255)

                                                                                     gATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAac               <  1:1101927/100‑1 (MQ=255)

                                                                                      aTGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAacg              <  1:118474/100‑1 (MQ=255)

                                                                                        gcgcTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcctacaaaaa            <  1:1019091/100‑10 (MQ=18)

                                                                                         cgcTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATACGGCGTTCACGCCGCATCTGGCATGAacgatg           <  1:1607079/100‑3 (MQ=255)

                                                                                         cgcTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAacgacg           >  2:2273302/1‑100 (MQ=255)

                                                                                         cgcTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAacgacg           >  1:1538555/1‑100 (MQ=255)

                                                                                         cgcTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTCAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGCCATGAacgacg           >  2:284544/1‑100 (MQ=255)

                                                                                          cgatctcTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGAcgc          <  2:1987398/94‑1 (MQ=255)

                                                                                                cTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTTTATTTTGGTTAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACtt    >  2:321217/1‑100 (MQ=25)

                                                                                                cTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGAcgcagatcg    >  1:1987415/1‑94 (MQ=255)

                                                                                                cTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACtt    >  1:1299193/1‑100 (MQ=255)

                                                                                                  tATCAGGCCTACCTGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTg  <  2:452153/100‑1 (MQ=255)

AGCGTATGTCCGGCAAAGGGGAGGGAGGTATGCGTAGTTTTCATATCGACCATATTCGAGACTGATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACATGG‑TCCTGCAATATATTGAATTGGCAAGATTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACGACGCGCACTTTG  >  NC_000913/610036‑610233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.