BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3082694 =	NA (NA)	5 (0.060)	5/164	NT	NA	noncoding (5/147 nt)	REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences
*	?	NC_000913	3082724 =	NA (NA)	5 (0.060)	5/164	NT	NA	noncoding (35/147 nt)	REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 127 total aligned reads displayed.

CGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAGGCGTTC  >  NC_000913/3082626‑3082822

gtaggccggataagatgcgccagcatcgcatccggcaatgcgcacaaggtaacaaatgtgccattcatGTCAGATAAGGCGTTCACGCCGCATCTGACAt                                                                                                   >  1:2052641‑M1/69‑100 (MQ=255)

cgcCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACAt                                                                                                   >  2:2153170/1‑100 (MQ=255)

cgcCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACAt                                                                                                   >  2:957871/1‑100 (MQ=255)

 taggccggataagatgcgccagcatcgcatccggcaatgcgcacaaggtaacaaatgtgccattcatGTCAGATAAGGCGTTCACGCCGCATCTGACATg                                                                                                  >  1:2068529‑M1/68‑100 (MQ=255)

 gcCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATg                                                                                                  <  1:695936/100‑1 (MQ=255)

  cccAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGCTAAGCCGTTCACGCCGCATCTGACATGa                                                                                                 >  1:2296520/1‑100 (MQ=255)

   ccAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGaa                                                                                                >  1:775271/1‑100 (MQ=255)

    cAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAAt                                                                                               <  1:1225805/100‑1 (MQ=255)

      cggataagatgcgccagcatcgcatccggcaatgcgcacaaggtaacaaatgtgccattcatGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATgg                                                                                             >  1:1099150‑M1/63‑100 (MQ=255)

        atatTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGca                                                                                           <  1:976590/100‑1 (MQ=255)

         tatTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGcac                                                                                          >  1:2259933/1‑100 (MQ=255)

          atTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGcaca                                                                                         >  1:1931756/1‑100 (MQ=255)

           ttCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACAt                                                                                        >  1:1925045/1‑100 (MQ=255)

            tCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACAtt                                                                                       <  2:1575036/100‑1 (MQ=255)

            tCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACAtt                                                                                       >  2:1329293/1‑100 (MQ=255)

              gcgATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTg                                                                                     <  2:595367/100‑1 (MQ=255)

                   cGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTAcc                                                                                <  1:1729614/100‑1 (MQ=255)

                     cATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCtt                                                                              >  1:340721/1‑100 (MQ=255)

                         aGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTgc                                                                          <  2:1925029/100‑1 (MQ=255)

                          atctggATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTgcg                                                                         <  1:631381/96‑1 (MQ=255)

                           cgcgGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTgcgc                                                                        >  2:94055/1‑100 (MQ=255)

                             cgGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCAt                                                                      <  2:576187/100‑1 (MQ=255)

                             cgGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCAt                                                                      >  2:257118/1‑100 (MQ=255)

                                  gggATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCg                                                                 <  1:1393160/100‑1 (MQ=255)

                                  gggATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCg                                                                 <  2:1454991/100‑1 (MQ=255)

                                  gggATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCg                                                                 <  1:255174/100‑1 (MQ=255)

                                  gggATTAAGTAAAGCCTGGTGGTGTCGAACGGAGGTCTGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCg                                                                 <  2:1609326/100‑1 (MQ=255)

                                   ggATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCgg                                                                >  1:1707344/1‑100 (MQ=255)

                                   ggATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCgg                                                                >  2:1313689/1‑100 (MQ=255)

                                   ggATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCgg                                                                >  1:1481257/1‑100 (MQ=255)

                                    gATTAAGTAAAGCCTGGTGGAGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACAGTTGTTACCTTGTGCGCATTGCCGga                                                               >  2:1453036/1‑100 (MQ=255)

                                     aTTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGgat                                                              <  2:1398830/100‑1 (MQ=255)

                                       naaGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATTAATGGCACATTTGTTACCTTGTTCGCATTACCGga                                                               >  2:153211/2‑97 (MQ=255)

                                        aaGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGgatgcg                                                           >  2:860223/1‑100 (MQ=255)

                                         aGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGgatgcga                                                          <  1:372134/100‑1 (MQ=255)

                                         aGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGgatgcga                                                          <  1:688898/100‑1 (MQ=255)

                                         aGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGgaggc                                                            >  2:2306267/1‑98 (MQ=255)

                                               gCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTgg                                                    <  1:1329300/100‑1 (MQ=255)

                                               gCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTgg                                                    >  1:455727/1‑100 (MQ=255)

                                               gCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTgg                                                    >  2:2329698/1‑100 (MQ=255)

                                               gCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTgg                                                    >  1:1867224/1‑100 (MQ=255)

                                               gCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTgg                                                    <  1:313790/100‑1 (MQ=255)

                                                ccTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGgc                                                   <  2:1125165/100‑1 (MQ=255)

                                                 cTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGgcg                                                  <  2:266440/100‑1 (MQ=255)

                                                 cTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGgcg                                                  >  1:1539254/1‑100 (MQ=255)

                                                   ggtggtGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCa                                                <  2:701268/100‑1 (MQ=255)

                                                   ggtggtGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCa                                                <  2:2129300/100‑1 (MQ=255)

                                                   ggtggtGTCGAAAGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCa                                                <  1:41887/100‑1 (MQ=255)

                                                     tggtgTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATc                                              <  1:2159241/100‑1 (MQ=255)

                                                      ggtgTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCt                                             <  2:893229/100‑1 (MQ=255)

                                                      ggtgTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCt                                             <  1:1494537/100‑1 (MQ=255)

                                                      ggtgTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCt                                             <  2:1505970/100‑1 (MQ=255)

                                                        tgtCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTa                                           >  1:907406/1‑100 (MQ=255)

                                                         gtgccattcatgtcagatgcggcgtgaacgccttatctgacATGAATGGCAGATTTGTTACCTTGTTCTCATTGCCGGATGCGATGCTGGCGCATCTTAt                                          >  1:553523‑M2/42‑100 (MQ=255)

                                                         gtCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTAt                                          >  1:1895896/1‑100 (MQ=255)

                                                         gtCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTAt                                          >  1:485550/1‑100 (MQ=255)

                                                         gtCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTAt                                          >  1:1278124/1‑100 (MQ=255)

                                                          tCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATc                                         <  2:748750/100‑1 (MQ=255)

                                                           cGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATcc                                        <  1:1112146/100‑1 (MQ=255)

                                                            gAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCg                                       <  1:2121845/100‑1 (MQ=255)

                                                            ccattcatgtcagatgcggcgtgaacgccttatctgacATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCg                                       >  1:1099150‑M2/39‑100 (MQ=255)

                                                             aaCGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCgg                                      <  2:886710/100‑1 (MQ=255)

                                                              aCGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGc                                     <  2:1707413/100‑1 (MQ=255)

                                                              aCGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGc                                     <  2:44483/100‑1 (MQ=255)

                                                                  atgtcagatgcggcgtgaacgccttatctgacATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTAc                                 >  1:2052641‑M2/33‑100 (MQ=255)

                                                                  aGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTAc                                 >  2:1709452/1‑100 (MQ=255)

                                                                  aGGTCAGATAAGACGTTCACGGCGCATCTGACATGAATGGCACATTTGTTCCCTTGTGCGCCTTGCGGCATAAGATGCGCGAGCATCGCATCCGGcatn                                  <  2:1068941/99‑4 (MQ=19)

                                                                   ggTCAGATAAGGCGTTCACGCCACATCTGACATGAATGGCACATTTGTTACCTTGTTCGCATTGCCGGATGTGATGCTGGCGCTTCTTATCCgtttt                                   >  2:1381867/1‑93 (MQ=38)

                                                                     TCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACggg                              >  1:1661984‑M1/1‑100 (MQ=255)

                                                                     TCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACggg                              <  2:2147955‑M1/100‑1 (MQ=255)

                                                                     TCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACggg                              >  2:2133389‑M1/1‑100 (MQ=255)

                                                                       AGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTg                            <  1:1517105‑M1/100‑1 (MQ=255)

                                                                         ATAATGCGTTCACGTCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGcc                          >  2:979149‑M1/1‑100 (MQ=255)

                                                                         ATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGcc                          >  1:2163868‑M1/1‑100 (MQ=255)

                                                                         ATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGcc                          >  1:2298045‑M1/1‑100 (MQ=255)

                                                                          TAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCTGCCTACGGGGGCCg                         <  2:452107‑M1/100‑1 (MQ=255)

                                                                             ggCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAAc                      <  2:368337/100‑1 (MQ=255)

                                                                               cGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGt                    >  1:603175/1‑100 (MQ=255)

                                                                                gTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGAGGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTa                   <  2:2044059/100‑1 (MQ=255)

                                                                                 ttCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAg                  <  2:1481248/100‑1 (MQ=255)

                                                                                 tgaacgccttatctgacATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAg                  >  2:586354‑M2/18‑100 (MQ=255)

                                                                                  tCACGCCGCATCTGAGATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAgg                 <  1:2354142/100‑1 (MQ=255)

                                                                                  tCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAgg                 <  1:957874/100‑1 (MQ=255)

                                                                                   cACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAg                  <  2:1129631/98‑1 (MQ=255)

                                                                                     cgccgcATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTc               <  2:2201321/99‑1 (MQ=255)

                                                                                      gccgcATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCgg             <  2:1721841/100‑1 (MQ=255)

                                                                                      gccgcATCTGACATGAATGGCACATTTGTTACCTTGTGCGAATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCgg             <  2:457033/100‑1 (MQ=255)

                                                                                        cgcATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGTGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGAt           <  1:1327149/100‑1 (MQ=255)

                                                                                         gcATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTCTCCGGCCTCCGGGTGCCGAACGTAGGTCGGa            >  2:1773147/1‑98 (MQ=255)

                                                                                          cATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATaa         >  1:827951/1‑100 (MQ=255)

                                                                                          cATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATaa         <  2:1904912/100‑1 (MQ=255)

                                                                                           atctgacATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAg        >  1:891490‑M2/8‑100 (MQ=255)

                                                                                            tctgacATGAATGGCACATTTGTTACCTTTTGCGCATTGCGGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAATGTAGGTAGGAt           <  2:707296‑M2/90‑1 (MQ=255)

                                                                                            tctgacATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAgg       <  2:2376247‑M2/94‑1 (MQ=255)

                                                                                            tctgacATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAgg       <  2:2259913‑M2/94‑1 (MQ=255)

                                                                                            tctgacATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAgg       >  2:741173‑M2/7‑100 (MQ=255)

                                                                                              tgacATGAATGGCACATTTGTTACCTTGTGCGCATTTCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAGGCg     <  1:1673715‑M2/96‑1 (MQ=255)

                                                                                              tgacATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAGGCg     >  2:856573‑M2/5‑100 (MQ=255)

                                                                                                 cATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAGGCGTTc  <  2:1835692‑M2/99‑1 (MQ=255)

                                                                                                 cATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAGGCGTTc  >  1:2383941‑M2/2‑100 (MQ=255)

CGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCGAACGTAGGTCGGATAAGGCGTTC  >  NC_000913/3082626‑3082822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.