New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3622466 =	NA (NA)	14 (0.170)	7/170	NT	100%	coding (3275/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3622497 =	0 (0.000)					coding (3306/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

GCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCG  >  NC_000913/3622398‑3622596                                                                                                    |                                                                                                    tcaggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgg                                                                                                     <  2:1978‑M2/1‑1 (MQ=255) tcaggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgg                                                                                                     <  1:48702‑M2/1‑1 (MQ=255) tcaggccgcacgatgccagccagccgcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgg                                                                                                     <  2:868438‑M2/1‑1 (MQ=255)  caggccgcacgatgccagccagcggcggctttcctcactcccccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                    <  2:548089‑M2/2‑1 (MQ=255)  caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgcgcatctgcaccagcaccggcgg                                                                                                     >  2:500716‑M2/99‑99 (MQ=255)  caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                    >  1:983477‑M2/99‑100 (MQ=255)  caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                    >  2:2179391‑M2/99‑100 (MQ=255)  caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                    <  1:1153379‑M2/2‑1 (MQ=255)  caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                    <  1:135231‑M2/2‑1 (MQ=255)   aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                   <  1:1323983‑M2/3‑1 (MQ=255)   aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                   >  1:241496‑M2/98‑100 (MQ=255)   aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                   <  2:1591753‑M2/3‑1 (MQ=255)   aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                   <  1:172947‑M2/3‑1 (MQ=255)   aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                   <  2:1338557‑M2/3‑1 (MQ=255)   aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                   <  2:1223247‑M2/3‑1 (MQ=255)   aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                   <  2:1113495‑M2/3‑1 (MQ=255)    ggccgcacgatgccagccagcggcggctttcctcactcccccggtcagccaggctttcactttccagccggtcgagcatctgcaccagcaccggcgg                                                                                                     >  2:1355167‑M2/97‑97 (MQ=255)    ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcacctgcaccggcgGGaa                                                                                                  <  2:1477855‑M2/4‑1 (MQ=255)    ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                  >  1:1246258‑M2/97‑100 (MQ=255)    ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                  >  1:1734489‑M2/97‑100 (MQ=255)    ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                  >  2:560531‑M2/97‑100 (MQ=255)    ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                  >  1:1844587‑M2/97‑100 (MQ=255)    ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                  >  1:242665‑M2/97‑100 (MQ=255)    ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                  >  1:1976729‑M2/97‑100 (MQ=255)      ccgcacgatgccagccagcggcggctttcctccctcacccggtcagccaggatttccctttccagccgggcgagcatctgcaccagcaccggcggggaca                                                                                                >  2:2056661‑M2/95‑96 (MQ=255)           cgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggcgaagacggt                                                                                           <  2:862730‑M2/11‑11 (MQ=255)                                                        gatttcactttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCAt                                              >  1:644103‑M2/45‑100 (MQ=255)                                                        gatttcactttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCAt                                              >  1:1249025‑M2/45‑100 (MQ=255)                                                             tcactttccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGc                                         >  1:2322668‑M2/40‑100 (MQ=255)                                                             cactttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTg                                          >  1:809804‑M2/40‑99 (MQ=255)                                                              cactttccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCg                                        >  1:565550‑M2/39‑100 (MQ=255)                                                              actttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGc                                         >  2:177181‑M2/39‑99 (MQ=255)                                                               ctttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                       >  1:955437‑M2/38‑100 (MQ=255)                                                               ctttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                       >  2:538530‑M2/38‑100 (MQ=255)                                                               ctttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                       >  2:458210‑M2/38‑100 (MQ=255)                                                               actttccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                       >  1:1361111‑M2/38‑100 (MQ=255)                                                                 ttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGcc                                     >  1:1695943‑M2/36‑100 (MQ=255)                                                                    cagccggtcgagcatctgcaccagcaccggctGGAAAGTGAAATCCTGGCTGACCGGGTGAGGGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCt                                    >  2:2387940‑M2/33‑98 (MQ=255)                                                                     agccggtcgagcatctgcaccagcaccggctGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGAc                                 >  1:741533‑M2/32‑100 (MQ=255)                                                                         cggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTg                             >  1:1779705‑M2/28‑100 (MQ=255)                                                                                                    GGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCg  >  2:2199969‑M2/1‑100 (MQ=255)                                                                                                    GGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCg  >  2:517496‑M2/1‑100 (MQ=255)                                                                                                    GGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCg  >  2:1621326‑M2/1‑100 (MQ=255)                                                                                                    |                                                                                                    GCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCG  >  NC_000913/3622398‑3622596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.