New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 707773 =NA (NA)5 (0.060) 4/160 NT NA noncoding (4/165 nt) RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 707805 = NA (NA)noncoding (36/165 nt) RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

Only 100 of 120 total aligned reads displayed.

ATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAG  >  NC_000913/707706‑707904
                                                                                                   |                                                                                                   
gatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGCaa                                                                                                     >  2:687894‑M1/68‑100 (MQ=255)
 tttAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGATATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAg                                                                                                    >  2:278165/1‑100 (MQ=255)
  ttAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAGAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAgg                                                                                                   >  1:1682384/1‑100 (MQ=255)
   tAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGa                                                                                                  >  2:444028/1‑100 (MQ=255)
   tAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGa                                                                                                  >  2:2219005/1‑100 (MQ=255)
   tAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGa                                                                                                  >  1:1555790/1‑100 (MQ=255)
    atgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGaa                                                                                                 >  1:853315‑M1/64‑100 (MQ=255)
     aCCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAAc                                                                                                >  2:620774/1‑100 (MQ=255)
     aCCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAAc                                                                                                >  1:1648834/1‑100 (MQ=255)
     aCCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAAc                                                                                                <  1:1586033/100‑1 (MQ=255)
     aCCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAAc                                                                                                >  2:740041/1‑100 (MQ=255)
       cGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAg                                                                                              <  1:1939971/100‑1 (MQ=255)
       cGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAg                                                                                              <  2:1690457/100‑1 (MQ=255)
         cACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGAc                                                                                            <  1:609752/100‑1 (MQ=255)
                gtgCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGTATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGt                                                                                     <  2:327919/98‑1 (MQ=255)
                gggCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGCCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGt                                                                                     <  2:1268741/100‑1 (MQ=255)
                  gCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGttt                                                                                   <  1:1156851/100‑1 (MQ=255)
                    tGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCa                                                                                 <  2:1070219/100‑1 (MQ=255)
                       gTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAAc                                                                              <  1:1547104/100‑1 (MQ=255)
                       gTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAAc                                                                              >  1:1786411/1‑100 (MQ=255)
                         gATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGc                                                                            >  1:228741/1‑100 (MQ=255)
                         gATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGc                                                                            <  1:1878430/100‑1 (MQ=255)
                            aCCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTaa                                                                         >  1:1746549/1‑100 (MQ=255)
                            aCCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCACATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTaa                                                                         >  1:679471/1‑100 (MQ=255)
                             ccTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTaaa                                                                        >  1:824590/1‑100 (MQ=255)
                                gggCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTg                                                                     >  2:1192316/1‑100 (MQ=255)
                                gggCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTg                                                                     >  1:2156238/1‑100 (MQ=255)
                                 ggCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGc                                                                    >  2:1051477/1‑100 (MQ=255)
                                  gCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGcc                                                                   <  2:1600638/100‑1 (MQ=255)
                                  gCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGcc                                                                   >  1:1445363/1‑100 (MQ=255)
                                  gCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACACTAAATTGcc                                                                   >  2:420492/1‑100 (MQ=255)
                                   cGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCt                                                                  >  2:860622/1‑100 (MQ=255)
                                     agaGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCt                                                                  <  2:917560/96‑1 (MQ=255)
                                       aGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATg                                                              <  1:408382/100‑1 (MQ=255)
                                        gTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATgc                                                             <  2:669320/100‑1 (MQ=255)
                                           ggCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                                                          <  1:1192322/100‑1 (MQ=255)
                                           ggCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                                                          <  1:800739/100‑1 (MQ=255)
                                           ggCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                                                          >  1:715138/1‑100 (MQ=255)
                                           ggCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                                                          >  2:2254702/1‑100 (MQ=255)
                                           ggCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCAGCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                                                          <  1:860624/100‑1 (MQ=255)
                                            gggAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTGCGTCGCATCCGGCAAGGGACAGACAAACAGTTTCAAACGCTAAATTGCCTGATgcgc                                                           <  2:460507/96‑1 (MQ=255)
                                            gCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTa                                                         >  2:700563/1‑100 (MQ=255)
                                            gCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGATTACGTCGCATCCGGCAAGGAACAGACAAACGGTTTCAAACGCTAAATTGCCTGATGCGCTa                                                         >  2:1279549/1‑100 (MQ=255)
                                             cGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTAc                                                        <  2:686505/100‑1 (MQ=255)
                                             cGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTAc                                                        >  1:289717/1‑100 (MQ=255)
                                                gTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCt                                                     <  1:620776/100‑1 (MQ=255)
                                                gTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCt                                                     <  1:1688532/100‑1 (MQ=255)
                                                    ttttAAGTTTGGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTTAATCGCTAAATTGCCTGATGCGCTACGCTTATc                                                 <  2:1569375/100‑1 (MQ=255)
                                                    ttttAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATc                                                 >  2:2279555/1‑100 (MQ=255)
                                                    ttttAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATc                                                 >  1:2254310/1‑100 (MQ=255)
                                                        aaGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGc                                             <  1:1222179/100‑1 (MQ=255)
                                                         aGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGcc                                            <  2:1948519/100‑1 (MQ=255)
                                                         aGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGcc                                            >  1:1960354/1‑100 (MQ=255)
                                                          gTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGcaa                                           <  1:444030/100‑3 (MQ=255)
                                                          gTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCt                                           >  1:534787/1‑100 (MQ=255)
                                                          gTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGCACCAGACAAACAGCTTCAAACGCTAAATTGCCTGCTGCGCTACGCTTCTCAGGc                                             >  2:932357/1‑98 (MQ=38)
                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGCACAGACAAACAGTTTCAAACGCGAAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                          >  2:218782/1‑100 (MQ=255)
                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTCAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                          >  2:169567/1‑100 (MQ=255)
                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                          >  2:1179324/1‑100 (MQ=255)
                                                            ttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTAc                                         >  1:1464468/1‑100 (MQ=255)
                                                             tCGCTATGCCGGATGGGGCGTTTAGGTCCCATCCGGTAAGGTACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGGGCTACGCTTATCAGGCCTACa                                        <  2:20599/100‑1 (MQ=37)
                                                              ttccttgccggatgcgacgtaaacgccccatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAt                                       >  1:853315‑M2/38‑100 (MQ=255)
                                                               ncTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATg                                      >  2:1679869/2‑100 (MQ=255)
                                                               gCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATg                                      >  1:1564444/1‑100 (MQ=255)
                                                                  ttgccggatgcgacgtaaacgccccatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtc                                   >  2:687894‑M2/34‑100 (MQ=255)
                                                                  aTGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtc                                   <  1:912339/100‑1 (MQ=255)
                                                                  aTGCCGGACGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAACTTGCCTGATGCGCTACGCCTATCAGGCCTACATGAtc                                   >  2:379133/1‑100 (MQ=255)
                                                                   tgccggatgcgacgtaaacgccccatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtct                                  >  1:1585058‑M2/33‑100 (MQ=255)
                                                                   TGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtct                                  <  1:364922‑M1/100‑1 (MQ=255)
                                                                   TGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtct                                  <  2:1917497‑M1/100‑1 (MQ=255)
                                                                   TGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtct                                  >  1:600294‑M1/1‑100 (MQ=255)
                                                                   TGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtct                                  >  1:1204689‑M1/1‑100 (MQ=255)
                                                                    gccggatgcgacgtaaacgccccatccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtctc                                 >  1:516218‑M2/32‑100 (MQ=255)
                                                                    GCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGCCAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtct                                  <  2:2015831‑M1/99‑1 (MQ=255)
                                                                    GCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtctc                                 <  2:2345654‑M1/100‑1 (MQ=255)
                                                                      CGGATGGGGCGTTTACGTCGCATCCGGCAAGCAACAGGCAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTg                               >  2:1606133‑M1/1‑100 (MQ=255)
                                                                       GGATGGGGCGTTTACGTCGCATCCGGCAAGTAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATctct                                >  2:354977‑M1/1‑98 (MQ=255)
                                                                       GGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGc                              >  2:1789864‑M1/1‑100 (MQ=255)
                                                                       GGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGc                              >  2:1631134‑M1/1‑100 (MQ=255)
                                                                         ATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCaa                            >  1:73697‑M1/1‑100 (MQ=255)
                                                                           GGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAata                          <  2:2125914‑M1/100‑1 (MQ=255)
                                                                           GGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAata                          <  1:2269094‑M1/100‑1 (MQ=255)
                                                                            gggCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAatat                         >  2:518494/1‑100 (MQ=255)
                                                                                  ttACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAg                   <  1:720600/100‑1 (MQ=255)
                                                                                  ttACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAg                   <  1:925379/100‑1 (MQ=255)
                                                                                   tACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAg                   <  2:1019427/99‑1 (MQ=255)
                                                                                    aCGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGtt                 <  2:1572506/100‑1 (MQ=255)
                                                                                        cGCATCCGGCAAGGAATAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCg             <  2:1393906/100‑1 (MQ=255)
                                                                                         gCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGCTCTCTGCAATATATTGAGTTTGCGt            >  2:1560040/1‑100 (MQ=255)
                                                                                          catccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTg           <  1:1046243‑M2/91‑1 (MQ=255)
                                                                                          aaTCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTACCTGATGCGCTACGCTTCTCGGGCCTATATGATTTCTACAATATATTGGATTTTCGTg           >  2:2246348/2‑100 (MQ=21)
                                                                                            tccggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCt         <  1:46573‑M2/93‑1 (MQ=255)
                                                                                              cggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCttt       >  1:1503327‑M2/6‑100 (MQ=255)
                                                                                              cggcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCttt       >  1:709947‑M2/6‑100 (MQ=255)
                                                                                              cggcaAGGAACAGACAAACAGTTTCAAACGCTAAATCGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCttt       >  1:1680451‑M2/6‑100 (MQ=255)
                                                                                                gcaAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTg     >  1:1776580‑M2/4‑100 (MQ=255)
                                                                                                 caAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGt    >  2:561831‑M2/3‑100 (MQ=255)
                                                                                                  aAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTa   >  1:613420‑M2/2‑100 (MQ=255)
                                                                                                  aAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTa   <  1:1388791‑M2/99‑1 (MQ=255)
                                                                                                   aGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAg  <  1:1479963/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
ATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAG  >  NC_000913/707706‑707904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.