| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729453 = | NA (NA) | 11 (0.140) | 9/158 | NT | 63.9% | intergenic (‑9/+163) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729475 = | 7 (0.080) | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
CTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATC > NC_000913/2729378‑2729574 | tacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtt > 2:1547181‑M2/98‑100 (MQ=255)tacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtt > 1:1310008‑M2/98‑100 (MQ=255)tacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagcacaccctacacgaaaatatcacgcaacgcgtgataagcaAtt > 2:919733‑M2/98‑100 (MQ=255) tAGGGGATTCGAACGCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataagc < 2:1182153/100‑4 (MQ=1) acgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaacctacacgaaaatatcacgcaacgcgtgataagcaAttt < 2:1406802‑M2/4‑1 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtttt > 1:1690335‑M2/96‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtttt > 1:941425‑M2/96‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtttt > 1:2035663‑M2/96‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaAtttt > 1:310571‑M2/96‑100 (MQ=255) cgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatataacgcaacgcgtgataagcaa > 2:1954664‑M2/96‑96 (MQ=255) gcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTc > 2:766841‑M2/95‑100 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 2:551752‑M2/7‑1 (MQ=255) cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCg < 1:1041769‑M2/7‑1 (MQ=255) gttgggagtgaggctgaagagaatagggccgttcgcgttctattaatgaaagctcagcctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgt > 2:217997‑M2/93‑100 (MQ=255) gttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgt > 1:1956766‑M2/93‑100 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 2:1996002‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 1:766843‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 1:648690‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 1:603250‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgtgcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 2:2080373‑M2/9‑1 (MQ=255) ttgggagtgaggctgaagagaataaggccgtgcgatttttattaaggaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtg < 2:2022249‑M2/9‑1 (MQ=255) tgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCgtgt < 2:1883463‑M2/10‑1 (MQ=255) gggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTa > 1:2225418‑M2/90‑100 (MQ=255) agtggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCAc < 1:1276058/97‑1 (MQ=1) cctacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTCGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTc > 1:1815199‑M2/36‑100 (MQ=255) tacacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTccc > 1:463661‑M2/34‑100 (MQ=255) acacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCa > 1:464438‑M2/33‑100 (MQ=255) acacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCa > 1:13905‑M2/33‑100 (MQ=255) cacgaaaatatcacgcaacgcgtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCaa > 1:544665‑M2/32‑100 (MQ=255) cgaaaatatcacgcaacgcgtgatATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTaa > 1:1058656‑M2/25‑100 (MQ=255) cgaaaatatcacgcaacgcgtgatATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTaa > 2:1702888‑M2/25‑100 (MQ=255) gaaaatatcacgcaacgcgtgatATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTaaa > 2:1810358‑M2/24‑100 (MQ=255) aaatatcacgcaacgcgtgatATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACg > 2:1089857‑M2/22‑100 (MQ=255) atatcacgcaacgcgtgatATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGcc > 1:1478308‑M2/20‑100 (MQ=255) gtgataagcaATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc < 2:464436‑M2/90‑1 (MQ=255) gTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc < 1:1630415/100‑1 (MQ=32) gTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc < 1:1198942/100‑1 (MQ=32) ttGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa < 1:1971931/100‑1 (MQ=32) gCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt < 2:390683/100‑1 (MQ=33) cGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt > 2:538623/1‑100 (MQ=33) cGTGATATTTTCGTGTAGGGTAAGATTTCATAAATAGGTAGCTCACGGCGTTCTCCTCATCATTAACAAACCCAACGCGTAAACGCCTTGCTATTCACt > 2:537656/1‑99 (MQ=2) gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt < 1:314552/100‑1 (MQ=33) gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt < 1:1465633/100‑1 (MQ=33) gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt < 2:2145723/100‑1 (MQ=32) gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt > 1:300/1‑100 (MQ=33) tGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt < 1:1979006/100‑1 (MQ=35) tGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 1:1244876/1‑100 (MQ=33) tGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 2:1912719/1‑100 (MQ=35) atatTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca < 2:143493/100‑1 (MQ=38) ATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGTCTTGCTATTCACTTTtcatc < 2:1460952‑M2/100‑1 (MQ=255) ATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 2:1260055‑M2/100‑1 (MQ=255) | CTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATC > NC_000913/2729378‑2729574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |