Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423823–3424234	3424606–3424238	5–784	64 [0]	[47] 49	[rrlD]	[rrlD]

CTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAG  >  NC_000913/3424556‑3424706                                                    |                                                                                                      cTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑Ag                                                      <  1:1916028/100‑1 (MQ=32) cTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGCATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑Ag                                                      >  2:2318172/1‑100 (MQ=18)   gTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAACGGGTGGTATATCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGcc                                                    >  2:1524603/1‑100 (MQ=16)   gTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGcc                                                    >  1:1540823/1‑100 (MQ=33)    tCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCt                                                   >  1:603199/1‑100 (MQ=33)      cGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTcc                                                 >  2:876317/1‑100 (MQ=33)         aaCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCAc                                              >  1:716652/1‑100 (MQ=33)          aCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCAcc                                             >  1:912669/1‑100 (MQ=33)          aCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCAcc                                             <  1:2148071/100‑1 (MQ=33)          aCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCAcc                                             >  1:628991/1‑100 (MQ=33)          aCCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCAcc                                             <  1:195627/100‑1 (MQ=33)           cccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCt                                            >  2:1059365/1‑100 (MQ=33)            ccGGATTACGGGTCAACGTTAGAACATCAGACATTAAAGGGTGGTATTGCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTa                                           <  1:564582/100‑1 (MQ=12)            ccGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTa                                           >  2:681278/1‑100 (MQ=33)             cGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑t                                         >  2:2360709/1‑100 (MQ=33)             cGGATTACGGGTCAACGGTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCACGCAGACTGACGTCCACACTTCTA‑AGCCTCCCACCTA‑t                                         >  2:619171/1‑100 (MQ=255)               gATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTan                                          <  2:1610723/98‑2 (MQ=17)               gATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑Tcc                                       <  2:1916062/100‑1 (MQ=33)                aTTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCt                                      <  2:1140617/100‑1 (MQ=33)                aTTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCt                                      <  2:1402703/100‑1 (MQ=33)                 ttACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTa                                     <  1:2067194/100‑1 (MQ=33)                  tACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTac                                    <  2:209355/100‑1 (MQ=33)                    cGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTacac                                  <  1:839279/100‑1 (MQ=33)                    cGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTacac                                  >  1:1112775/1‑100 (MQ=32)                     gggTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACGACTA‑AGCCTCCCACCTA‑TCCTAcaca                                 <  2:340090/100‑1 (MQ=12)                            cGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACTCTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGc                          <  1:1274411/100‑1 (MQ=18)                             gTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCAAACAGACTGGCGGCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACAAATCAAggat                         >  2:1348592/1‑98 (MQ=11)                              ttAGAACATCACACATTAACGGGTGCTCTTTCAAGGTCGGCGCTATGCAGACTGGCGTCCACACTTCTA‑AGCCTTCCCCCGC‑TCCTCCACATCAAGGccc                        >  2:655556/1‑98 (MQ=11)                               tAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCa                       <  1:1059369/100‑1 (MQ=33)                                aGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCaa                      <  1:518903/100‑1 (MQ=33)                                aGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCaa                      <  1:884966/100‑1 (MQ=33)                                  aaCATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATg                    <  1:1090522/100‑1 (MQ=33)                                   aCATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGt                   <  1:195640/100‑1 (MQ=32)                                    cATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGtt                  >  1:2098223/1‑100 (MQ=33)                                      tcctaCATTAAAGTGTGGTATTTCAAGGCCGGCTCCTTGCAGTCTTGCGT‑TTTAATGCTACGGCGACCCACGAA‑ACCTACACATCAAGGCTCAATGTTc                 <  2:2313020/95‑1 (MQ=2)                                       cAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAg               <  1:1145194/100‑1 (MQ=33)                                        aaaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGATTGTTGT‑TTTAATGATA‑CGGCGACCACCGAGATCTACACATCAAGGCTCAATGTTCAgt              <  2:845724/100‑1 (MQ=0)                                         aaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGATTGTCGTTTTCA‑TGATA‑AGGCGACCACCGAGACCTACACATCAAGGCTCAATGTTCAg               <  2:251722/98‑1 (MQ=2)                                         aaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGTCGTCCACACTTCTA‑AGCCTCCCACCTA‑ACCTACACATCAAGGCTCAATGTTCAgtg             <  2:1527089/100‑1 (MQ=12)                                         aaCATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAgtg             <  1:2011969/100‑1 (MQ=33)                                            aTTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCa          <  2:1870365/100‑1 (MQ=33)                                              tAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTTTA‑AGCCTCCCCCCAA‑ACCTACACATCAAGGCTCAATGTTCAGTGTCAAg        <  2:912667/100‑1 (MQ=11)                                              tAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAg        <  2:628989/100‑1 (MQ=33)                                               aaaGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGc       <  2:747205/100‑1 (MQ=32)                                                  gggTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtat    >  1:1256358/1‑100 (MQ=33)                                                  gggTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtat    >  1:613106/1‑100 (MQ=32)                                                   ggtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCtata   <  1:502007/100‑1 (MQ=33)                                                    gtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAg  >  2:784552/1‑100 (MQ=33)                                                    gtggtATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAg  >  2:183249/1‑100 (MQ=33)                                                    |                                                                                                      CTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTA‑AGCCTCCCACCTA‑TCCTACACATCAAGGCTCAATGTTCAGTGTCAAGCTATAG  >  NC_000913/3424556‑3424706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑