Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	2,761,620	T→G	16.1%	K641Q (AAG→CAG)	yfjK ←	radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,761,620	0	T	G	16.1%	243.1 / 36.7	93	K641Q (AAG→CAG)	yfjK	radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
Reads supporting (aligned to +/- strand):  ref base T (31/47);  new base G (11/4);  total (42/51)
Fisher's exact test for biased strand distribution p-value = 2.31e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01

TGCCAATCTCTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCATTGTTGAGGG  >  NC_000913/2761521‑2761718                                                                                                    |                                                                                                   tGCCAATCTCTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCtt                                                                                                    >  1:2298888/1‑100 (MQ=255)   ccAATCTCTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTa                                                                                                  >  1:1825916/1‑100 (MQ=255)    cAATCTCTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTAc                                                                                                 >  1:1898986/1‑100 (MQ=255)      aTCTCTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAg                                                                                               <  1:86704/100‑1 (MQ=255)      aTCTCTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAg                                                                                               <  1:1434331/100‑1 (MQ=255)       tctcTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGc                                                                                              <  2:1855731/100‑1 (MQ=255)       tctcTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGc                                                                                              <  2:314518/100‑1 (MQ=255)        ctctTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCg                                                                                             <  2:2342948/100‑1 (MQ=255)         tcttctAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCgt                                                                                            >  1:2085665/1‑100 (MQ=255)          cttctAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCgtg                                                                                           >  2:523111/1‑100 (MQ=255)            tctAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCgtggt                                                                                         >  1:1101251/1‑100 (MQ=255)             ctAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCgtggtg                                                                                        >  2:731523/1‑100 (MQ=255)              tAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGgtgt                                                                                       >  1:1985146/1‑100 (MQ=255)               aaGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGtt                                                                                      <  2:59356/100‑1 (MQ=255)               aaGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTGTAAAGCgtggtata                                                                                      <  2:1786011/100‑4 (MQ=255)                aGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTGTAAAGCgtggtatac                                                                                     <  1:2190586/100‑5 (MQ=255)                aGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTGTAAAGCgtggtatac                                                                                     <  1:1269674/100‑5 (MQ=255)                 ggCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTa                                                                                    <  1:2246625/100‑1 (MQ=255)                  gCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTaa                                                                                   >  2:2342106/1‑100 (MQ=255)                   cATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAAc                                                                                  >  1:751041/1‑100 (MQ=255)                       gACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACa                                                                              <  2:1101994/100‑1 (MQ=255)                          acCTGGTGGTAGAGGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACAtcn                                                                           <  2:1122519/100‑2 (MQ=255)                           ccTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACAtcct                                                                          >  1:1373422/1‑100 (MQ=255)                           ccTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACAtcct                                                                          <  2:1965455/100‑1 (MQ=255)                            cTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGATATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACAtcctc                                                                         >  1:1678715/1‑100 (MQ=255)                             tggtggTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACAtcctcc                                                                        <  2:680476/100‑1 (MQ=255)                              ggtggtAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCa                                                                       >  1:846107/1‑100 (MQ=255)                                tggtAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATc                                                                     <  1:600306/100‑1 (MQ=255)                                 ggtAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCa                                                                    <  2:1692418/100‑1 (MQ=255)                                    aGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGc                                                                 <  1:1266661/100‑1 (MQ=255)                                       tGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGa                                                              >  1:1411597/1‑100 (MQ=255)                                       tGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGa                                                              <  1:141255/100‑1 (MQ=255)                                       tGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTg                                                               >  2:543612/1‑99 (MQ=255)                                         gAAACTTTCGAACGCTAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGc                                                            <  1:2351243/100‑1 (MQ=255)                                          aaaCTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAg                                                             <  2:2073822/98‑1 (MQ=255)                                          aaaCTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCa                                                           <  1:1888576/100‑1 (MQ=255)                                          aaaCTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCa                                                           <  1:1754287/100‑1 (MQ=255)                                            aCTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCAcc                                                         <  2:2166234/100‑1 (MQ=255)                                              tttCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCtt                                                       <  2:56743/100‑1 (MQ=255)                                               ttCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTta                                                      <  2:29977/100‑1 (MQ=255)                                                 cGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTtagg                                                    <  2:586683/100‑1 (MQ=255)                                                 cGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTtagg                                                    >  1:879600/1‑100 (MQ=255)                                                  gAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTtaggt                                                   >  1:584636/1‑100 (MQ=255)                                                   aaCGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTtaggta                                                  <  2:2168230/100‑1 (MQ=255)                                                       ccAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGt                                              <  1:442970/100‑1 (MQ=255)                                                       ccAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGt                                              <  2:1494202/100‑1 (MQ=255)                                                        cAATTTGACATGTGTGTAGTCGTCTTTGCCGCGTATACCACGCTTTACAGCGTGGTGTTTACCTCCATCCTCCGTCAAGCTGAGCCCCTTAGGTAGGGta                                             <  2:2024092/100‑1 (MQ=255)                                                         aaTTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGtat                                            >  1:309323/1‑100 (MQ=255)                                                                  tgtgtgTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAgg                                   <  1:55533/100‑1 (MQ=255)                                                                  tgtgtgTAATCAACTTTGCTGCGTATATCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAgg                                   <  2:668163/100‑1 (MQ=255)                                                                   gtgtggAATCGACGTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTGAACTGCATCCTCCATCAAGCTGAGCAGCTTAGGTAGGGTATAGCCGAAgg                                   <  2:78273/99‑1 (MQ=255)                                                                       gtAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTAtt                               >  1:477359/1‑99 (MQ=255)                                                                        tAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTgg                             <  2:137818/100‑1 (MQ=255)                                                                          aTCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGtt                           >  1:1114425/1‑100 (MQ=255)                                                                           tcgatgttGCTGCGTAGACAACGCTGTACAGCGGGGTGTTTGAGTACATGGGCCGGCAGGGTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGtt                           <  2:1496040/93‑1 (MQ=255)                                                                             gagtttGCTGCGAATACCACGCTTTACAGCGTGGTGTTAAACTACATCCTCCATCAAGCTGTGTACCTTAGGACGGGTATAGCGGAAGGTATTGGTTAt                         >  2:848216/4‑99 (MQ=255)                                                                             gACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATg                        >  2:2355189/1‑100 (MQ=255)                                                                              aCTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGa                       <  2:147011/100‑1 (MQ=255)                                                                              aCTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGa                       >  2:2206577/1‑100 (MQ=255)                                                                               cTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACTTTAGGTAGGGTATAGCCGAAGGTATTGGTTAt                         <  2:863109/97‑1 (MQ=255)                                                                               cTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAg                      >  2:351545/1‑100 (MQ=255)                                                                               cTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAg                      <  1:60786/100‑1 (MQ=255)                                                                               cTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAg                      >  2:2279131/1‑100 (MQ=255)                                                                                tttGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGc                     <  1:1188926/100‑1 (MQ=255)                                                                                tttGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGc                     >  2:581885/1‑100 (MQ=255)                                                                                 ttGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCt                    <  2:1943396/100‑1 (MQ=255)                                                                                 ttGCTGCGTATACCACGCTTTACAGCGTGGGGTTTAAGTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAg                      <  2:1675247/98‑1 (MQ=255)                                                                                    ctgcGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCa                 <  1:731525/100‑1 (MQ=255)                                                                                      gcGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCaaa               <  1:1256166/100‑1 (MQ=255)                                                                                       cGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAAt              <  2:1898550/100‑1 (MQ=255)                                                                                        gTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATc             <  1:1898728/100‑1 (MQ=255)                                                                                        aaacaCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATc             >  1:1460806/5‑100 (MQ=255)                                                                                         nacaCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCa            >  2:789762/4‑100 (MQ=255)                                                                                         aacaCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCa            >  1:2278170/4‑100 (MQ=255)                                                                                          ataCCACGCTTTACATCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCTCCTTAGGTAGGGTATAGCCGAAGGTATTGGTTTTGAGCTTCAAATCAt           <  2:390320/100‑1 (MQ=255)                                                                                          acaCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAt           >  1:1380185/3‑100 (MQ=255)                                                                                          acaCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAt           >  1:1335765/3‑100 (MQ=255)                                                                                          acaCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAt           >  1:222691/3‑100 (MQ=255)                                                                                          acaCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTAAGGTAGGGTATAGCCGAAGGAATTGTTTAAGAGCTTCAAATCa            >  1:1296689/3‑99 (MQ=255)                                                                                          aaaCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTGCAAATCAt           >  1:1616512/3‑100 (MQ=255)                                                                                           caCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAtt          >  1:2119160/2‑100 (MQ=255)                                                                                           caCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAtt          >  2:475023/2‑100 (MQ=255)                                                                                            aCCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAttg         >  1:2160291/1‑100 (MQ=255)                                                                                            aCCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAttg         >  2:1557465/1‑100 (MQ=255)                                                                                            aCCACGCTGTAAAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAttg         >  1:237578/1‑100 (MQ=255)                                                                                             ccACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAttgt        >  1:1062033/1‑100 (MQ=255)                                                                                             ccACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAttgt        >  1:255111/1‑100 (MQ=255)                                                                                              cACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAttgtt       <  2:1029029/100‑1 (MQ=255)                                                                                              cACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAttgt        >  1:1426463/1‑99 (MQ=255)                                                                                               aCGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCAttgttg      <  2:1239366/100‑1 (MQ=255)                                                                                                 gCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCATTGTTGAg    <  1:285047/100‑1 (MQ=255)                                                                                                  cTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCATTGTTGAgg   >  1:101004/1‑100 (MQ=255)                                                                                                  cTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCATTGTTGAgg   <  2:572300/100‑1 (MQ=255)                                                                                                  cTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCATTGTTGAgg   <  2:1101246/100‑1 (MQ=255)                                                                                                   tttACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCATTGTTGAggg  <  1:202896/100‑1 (MQ=255)                                                                                                    |                                                                                                   TGCCAATCTCTTCTAAGGCATTGACACCTGGTGGTAGATGGAAACTTTCGAACGCCAATTTGACATGTGTGTAATCGACTTTGCTGCGTATACCACGCTTTACAGCGTGGTGTTTAACTACATCCTCCATCAAGCTGAGCACCTTAGGTAGGGTATAGCCGAAGGTATTGGTTATGAGCTTCAAATCATTGTTGAGGG  >  NC_000913/2761521‑2761718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑