| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 33.7% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 33.7% | 203.9 / 144.3 | 130 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (39/46); new base G (39/4); total (78/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.66e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-02 | |||||||||||
Only 100 of 132 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 | ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 1:2220446/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:451302/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:2386273/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:1965785/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:1793185/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 1:2083787/1‑99 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 1:2031096/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 1:533609/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:1659655/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:2265040/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTTTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:1680355/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1527873/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:2246673/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:257273/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:1026546/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:1049687/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:1289056/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGGTTGTTGACAAAGGGTGCTTTGTTTCTGCTGGATGCGGCGTTAACGCCTTAGCCGCCCTAC‑a > 2:1420308/1‑96 (MQ=37) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1625146/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:1757996/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:95124/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:1598712/1‑100 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaaa > 2:367193/1‑100 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt > 2:910870/1‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:531135/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1583913/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:2132931/100‑1 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCaa < 1:595832/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 1:791972/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 2:2011285/98‑1 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Gaa > 2:1997370/1‑100 (MQ=255) ataCGGATTGTTGACAAAGTGCGCGTTGTTTAAGCTGGATGCGGCGTTAACGCCTTATCGGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑g < 2:2214437/95‑1 (MQ=14) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑t‑‑‑t > 2:2085102/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTc > 2:336257/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑g < 1:1540601/100‑1 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAg < 1:913858/100‑1 (MQ=255) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAgg > 1:224687/7‑100 (MQ=18) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAgg > 1:1556835/7‑100 (MQ=18) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAgg > 1:1159376/7‑100 (MQ=17) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGc > 1:1266934/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGc < 2:1541466/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGcc < 1:1978294/99‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTg < 1:1234760/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTg > 1:389865/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:1205306/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATa < 1:571042/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCTTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg < 1:992402/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTCC‑AAACTCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:1544585/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:1472279/100‑1 (MQ=255) gcgcTTTGTTTATGTCGGATGCGGCGTTAACGCCTTATCCGGGCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa < 2:851541/100‑1 (MQ=255) gattttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAgcg > 1:1437372/11‑100 (MQ=18) gaatttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAgcgc > 1:1962390/11‑100 (MQ=18) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCa > 1:1368646/9‑100 (MQ=18) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:1472132/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:797622/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:1806524/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCGTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:61560/5‑100 (MQ=21) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1017640/5‑100 (MQ=21) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1923143/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAGGCGTAGCGCATCAgg > 1:2351496/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2073405/4‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑ATA‑T‑‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 1:1094191/3‑99 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1311126/3‑100 (MQ=18) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:2300622/3‑100 (MQ=18) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1154672/1‑100 (MQ=255) ggcctgataaggcgTTTACGCCGCATCAGGCCTAC‑AAGATCGTGCAAATTCAACATATTGC‑‑CACT‑C‑‑‑ACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:456011/11‑100 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGGGC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:181213/2‑100 (MQ=17) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2323033/2‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1884715/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2153720/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1336598/1‑99 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 1:802835/100‑1 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:150657/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2233425/1‑99 (MQ=255) caggataaggcgTTCACGCCGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTGCA‑CAGC‑T‑‑‑AGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaga > 1:1611143/9‑98 (MQ=25) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatc > 1:1920055/8‑97 (MQ=25) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 1:2206527/8‑97 (MQ=21) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 1:1136997/8‑97 (MQ=21) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑ATCT‑C‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 1:1713102/8‑97 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:272095/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1233241/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCA‑ATCT‑T‑‑‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaagct > 1:820875/7‑96 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCAatt > 1:309886/7‑100 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:578233/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1329654/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:96255/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:70859/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:36153/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCA‑GGGA‑C‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagctt > 2:542949/7‑96 (MQ=21) ggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAAGCCTGATAAGCGGAGCGCATCAGGCAtttt > 1:992215/7‑100 (MQ=18) gataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:1091493/6‑100 (MQ=17) tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 1:1157620/1‑100 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc > 1:64634/1‑100 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc > 1:879450/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:451735/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 1:833794/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATGCATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:1299124/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:693720/100‑1 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:1286161/1‑100 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 2:56540/100‑1 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |