| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 32.5% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 32.5% | 183.2 / 120.0 | 130 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (39/48); new base C (39/3); total (78/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.98e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.27e-03 | |||||||||||
Only 100 of 133 total aligned reads displayed.
GCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705890‑3706084 | gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:451302/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:1793185/100‑1 (MQ=255) ggtgggCTCTGCACGCAGTGGCACAGCGCGACGGCGTATACAGATTGTTGACAAAGTGCGCTTGGTTTATGCTGGATAAGGCGTTAACGCCCGATCCGGc < 2:1485043/96‑1 (MQ=18) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:1659655/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 1:2031096/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 1:533609/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:2265040/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTTTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:1680355/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1527873/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:2246673/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:257273/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:1026546/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:1049687/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:1289056/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1625146/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:1757996/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:95124/100‑1 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:970509/98‑1 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaaa > 2:367193/1‑100 (MQ=255) agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt > 2:910870/1‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACCAAGTGCGCTGTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:1672339/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:531135/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:649986/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1583913/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:2132931/100‑1 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCaa < 1:595832/100‑1 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCaa > 1:583378/1‑100 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 1:791972/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:2019038/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 2:2011285/98‑1 (MQ=255) cGGGTATACAGATTGTTCACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa < 2:2168621/99‑1 (MQ=255) ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Gaa > 2:1997370/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑t‑‑‑tt > 2:1234753/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTc > 2:336257/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑g < 1:1540601/100‑1 (MQ=255) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAgg > 1:1556835/7‑100 (MQ=18) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAgg > 1:224687/7‑100 (MQ=18) gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAgg > 1:1159376/7‑100 (MQ=17) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGc > 1:1266934/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTg < 1:1234760/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTg > 1:389865/1‑100 (MQ=255) aaatggcgcTTTATATAGGCCGGATGCGGCGTTAACGCCCTATCAGGCCTGC‑AAAAGCGTGCATTTTCACTACATTGCA‑TAAT‑T‑‑‑TTC‑‑GTAGTCCTGATa < 2:1548107/94‑1 (MQ=16) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTCC‑AAACTCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:1544585/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:1472279/100‑1 (MQ=255) gcgcTTTGTTTATGTCGGATGCGGCGTTAACGCCTTATCCGGGCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa < 2:851541/100‑1 (MQ=255) gattttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAgcg > 1:1437372/11‑100 (MQ=18) gaatttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAgcgc > 1:1962390/11‑100 (MQ=18) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCa > 1:1368646/9‑100 (MQ=18) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:1472132/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:797622/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:1065081/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:1806524/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCGTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:61560/5‑100 (MQ=21) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1017640/5‑100 (MQ=21) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1923143/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAGGCGTAGCGCATCAgg > 1:2351496/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2073405/4‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑ATA‑T‑‑‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 1:1094191/3‑99 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1311126/3‑100 (MQ=18) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:2300622/3‑100 (MQ=18) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1154672/1‑100 (MQ=255) ggcctgataaggcgTTTACGCCGCATCAGGCCTAC‑AAGATCGTGCAAATTCAACATATTGC‑‑CACT‑C‑‑‑ACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:456011/11‑100 (MQ=21) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGGGC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:181213/2‑100 (MQ=17) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2323033/2‑100 (MQ=18) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTAT‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATGCGCTGCGCTTATCAGGcct < 1:464619/100‑3 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1884715/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2153720/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2360505/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1336598/1‑99 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GGAA‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCagt > 1:2178199/9‑98 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 1:802835/100‑1 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:150657/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2233425/1‑99 (MQ=255) caggataaggcgTTCACGCCGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTGCA‑CAGC‑T‑‑‑AGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaga > 1:1611143/9‑98 (MQ=25) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatc > 1:1920055/8‑97 (MQ=25) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 1:2206527/8‑97 (MQ=21) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 1:1136997/8‑97 (MQ=21) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑ATCT‑C‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatt > 1:1713102/8‑97 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:272095/1‑100 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1233241/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCAatt > 1:309886/7‑100 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:578233/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:834119/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1329030/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1329654/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:96255/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:70859/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:36153/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCA‑GGGA‑C‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagctt > 2:542949/7‑96 (MQ=21) ggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAAGCCTGATAAGCGGAGCGCATCAGGCAtttt > 1:992215/7‑100 (MQ=18) gataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:1091493/6‑100 (MQ=17) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 1:1981795/100‑1 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 1:1157620/1‑100 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc > 1:879450/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 1:833794/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:693720/100‑1 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:1286161/1‑100 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 2:56540/100‑1 (MQ=255) tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt > 2:252956/1‑100 (MQ=255) tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt > 1:417887/1‑100 (MQ=255) | GCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705890‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |