Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,596,220	(TCA)3→2	coding (182‑184/927 nt)	livH ←	branched‑chain amino acid ABC transporter permease

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3596212	3596214	3	97 [0]	[0] 98	livH	branched‑chain amino acid ABC transporter permease

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3596215 =	0 (0.000)	87 (0.700)	63/182	1.4	100%	coding (189/927 nt)	livH	branched‑chain amino acid ABC transporter permease
	?	NC_000913	= 3596211	0 (0.000)					coding (193/927 nt)	livH	branched‑chain amino acid ABC transporter permease

GGCGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCCATCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTAAA  >  NC_000913/3596112‑3596309                                                                                                    |                                                                                                   ggCGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGcc                                                                                                    >  2:3051992/1‑100 (MQ=255)   cGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCca                                                                                                  >  2:2242303‑M2/1‑98 (MQ=255)   cGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCca                                                                                                  <  1:2134465‑M2/100‑3 (MQ=255)    ggTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcat                                                                                                 >  1:1046422‑M2/1‑97 (MQ=255)     gTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatc                                                                                                <  1:1348327‑M2/100‑5 (MQ=255)      tAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatca                                                                                               >  1:2553114‑M2/1‑95 (MQ=255)       aaGCCACCCGTTCGATACTCCAGCCTTAGGCGCTGGCAATGACGATTGCGCCGACGAAGCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcat                                                                                              >  2:2985989‑M2/1‑94 (MQ=255)        aGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatc                                                                                             >  2:250092‑M2/1‑93 (MQ=255)         gCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatca                                                                                            <  2:2170710‑M2/100‑9 (MQ=255)         gCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatca                                                                                            <  1:2982179‑M2/100‑9 (MQ=255)          ccACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcag                                                                                           <  1:1990631‑M2/100‑10 (MQ=255)            aCCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcg                                                                                         <  1:3020450‑M2/100‑12 (MQ=255)             cccGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgc                                                                                        <  2:269597‑M2/100‑13 (MQ=255)              ccGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcg                                                                                       <  1:1304503‑M2/100‑14 (MQ=255)              ccGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcg                                                                                       <  2:2779479‑M2/100‑14 (MQ=255)               cGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcgg                                                                                      >  1:1344337‑M2/1‑86 (MQ=255)                   cGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgat                                                                                  <  1:2515392‑M2/100‑19 (MQ=255)                    gATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatg                                                                                 >  2:2915917‑M2/1‑81 (MQ=255)                        caccagCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCTGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgat                                                                               >  2:906090‑M2/3‑77 (MQ=255)                        cTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatca                                                                             <  2:1442606‑M2/100‑24 (MQ=255)                        cTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatca                                                                             <  2:2662724‑M2/100‑24 (MQ=255)                          ccAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGTAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcata                                                                           <  1:1681342‑M2/100‑26 (MQ=255)                          ccAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcata                                                                           <  1:3115745‑M2/100‑26 (MQ=255)                          ccAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcata                                                                           >  1:2651510‑M2/1‑75 (MQ=255)                            aGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaa                                                                         >  1:2575739‑M2/1‑73 (MQ=255)                               cGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatga                                                                      >  2:177312‑M2/1‑70 (MQ=255)                                 tAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgaga                                                                    <  2:2370749‑M2/100‑33 (MQ=255)                                  ttccgatctcaatgacgatTGCGCCGACGAATCCCGCTGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagac                                                                   >  2:1297541‑M2/10‑67 (MQ=255)                                   ggCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacg                                                                  <  2:3035998‑M2/100‑35 (MQ=255)                                   ggCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacg                                                                  <  2:1434348‑M2/100‑35 (MQ=255)                                    gcgcTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgt                                                                 >  2:774644‑M2/1‑65 (MQ=255)                                     cgcTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgt                                                                 >  2:2652056‑M2/1‑64 (MQ=255)                                      gcTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtag                                                               <  2:1969803‑M2/100‑38 (MQ=255)                                       cTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagc                                                              <  1:3317349‑M2/100‑39 (MQ=255)                                         ggCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctg                                                            <  2:2247826‑M2/100‑41 (MQ=255)                                         ggCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctg                                                            <  2:1217627‑M2/100‑41 (MQ=255)                                         ggCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGGATCAATGCCcatcatcagcgcggcgacgatcataaatgagacgtagct                                                             <  2:1626327‑M2/99‑40 (MQ=255)                                           cAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgcc                                                          >  2:1508815‑M2/1‑58 (MQ=255)                                           cAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgcc                                                          <  1:80090‑M2/100‑43 (MQ=255)                                           cAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgcc                                                          >  2:1086558‑M2/1‑58 (MQ=255)                                           cAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcaaaaatgagacagatcggaa                                                          <  1:1297545‑M2/100‑43 (MQ=255)                                            aaTGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgcca                                                         <  2:2243077‑M2/100‑44 (MQ=255)                                             aTGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaa                                                        <  1:1340182‑M2/100‑45 (MQ=255)                                             aTGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaa                                                        <  2:2942897‑M2/100‑45 (MQ=255)                                               gACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatc                                                      >  1:2928700‑M2/1‑54 (MQ=255)                                                aCGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatca                                                     >  1:1109474‑M2/1‑53 (MQ=255)                                                aCGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatca                                                     >  1:1067717‑M2/1‑53 (MQ=255)                                                aCGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatca                                                     >  2:1510573‑M2/1‑53 (MQ=255)                                                 cGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcat                                                    >  1:228675‑M2/1‑52 (MQ=255)                                                   aTTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatat                                                  >  1:3124246‑M2/1‑50 (MQ=255)                                                    ttGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatata                                                 >  1:3191415‑M2/1‑49 (MQ=255)                                                    ttGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatat                                                  >  2:3200685‑M2/1‑49 (MQ=255)                                                      gcgcCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaa                                               <  2:755712‑M2/100‑54 (MQ=255)                                                      gcgcCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaa                                               >  1:2170721‑M2/1‑47 (MQ=255)                                                       cgcCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaac                                              >  2:2238727‑M2/1‑46 (MQ=255)                                                       cgcCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaaagagacgtagatgccaatcatataaa                                               <  2:1937700‑M2/99‑54 (MQ=255)                                                         ccGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacct                                            <  2:3147615‑M2/100‑57 (MQ=255)                                                          cgacgaATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctc                                           <  2:1030411‑M2/100‑58 (MQ=255)                                                           gacgaATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcg                                          <  2:2642554‑M2/100‑59 (MQ=255)                                                           gacgaATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcg                                          <  1:3257825‑M2/100‑59 (MQ=255)                                                              gaATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccg                                       <  2:1598320‑M2/100‑62 (MQ=255)                                                               aaTCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgt                                      <  2:55915‑M2/100‑63 (MQ=255)                                                               aaTCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgt                                      <  2:2268917‑M2/100‑63 (MQ=255)                                                                  cccGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtggg                                   >  2:24126‑M2/1‑35 (MQ=255)                                                                   ccGCAGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggc                                  >  1:1001109‑M2/1‑34 (MQ=255)                                                                       aGCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaag                              >  2:1278377‑M2/1‑30 (MQ=255)                                                                        gCTACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaa                               >  2:2510176‑M2/1‑29 (MQ=255)                                                                        gCTACCAGCAGCCAGCCGGTATCAATGCCcaccatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagt                             <  1:2254034‑M2/100‑72 (MQ=255)                                                                          tACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttga                           <  2:310197‑M2/100‑74 (MQ=255)                                                                          tACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttg                           <  2:1448628‑M2/100‑74 (MQ=255)                                                                          tACCAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttg                           >  1:1149393‑M2/1‑27 (MQ=255)                                                                            ccAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgat                         >  1:1040064‑M2/1‑25 (MQ=255)                                                                            ccAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgat                         >  1:830927‑M2/1‑25 (MQ=255)                                                                            ccAGCAGCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgat                         <  1:829997‑M2/100‑76 (MQ=255)                                                                             cagcagCCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaacgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatc                        >  2:838346‑M2/1‑24 (MQ=255)                                                                              agcagcCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatca                       >  2:2571728‑M2/1‑23 (MQ=255)                                                                               gcagcCAGCCGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcat                      <  2:380989‑M2/100‑79 (MQ=255)                                                                                  gccagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgcc                   <  1:131076‑M2/100‑82 (MQ=255)                                                                                   ccagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccg                  <  2:359694‑M2/100‑83 (MQ=255)                                                                                    cagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccga                 <  1:1450223‑M2/100‑84 (MQ=255)                                                                                    cagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccga                 <  2:1482884‑M2/100‑84 (MQ=255)                                                                                    cagccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccga                 >  2:1304499‑M2/1‑17 (MQ=255)                                                                                     agccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgat                >  2:3317331‑M2/1‑16 (MQ=255)                                                                                       ccGGTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataa              <  2:3016004‑M2/100‑87 (MQ=255)                                                                                         ggTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatg            >  2:475222‑M2/1‑12 (MQ=255)                                                                                          gTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgc           >  2:3020433‑M2/1‑11 (MQ=255)                                                                                          gTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgc           <  1:1294655‑M2/100‑90 (MQ=255)                                                                                          gTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgc           >  1:2662737‑M2/1‑11 (MQ=255)                                                                                          gTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgc           >  2:1340178‑M2/1‑11 (MQ=255)                                                                                          gTATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgc           >  1:1217631‑M2/1‑11 (MQ=255)                                                                                           tATCAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgcc          <  1:1886706‑M2/100‑91 (MQ=255)                                                                                              cAATGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgta       <  1:1545460‑M2/100‑94 (MQ=255)                                                                                               aaTGCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgtaa      <  1:2414682‑M2/100‑95 (MQ=255)                                                                                                  gCCcatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgtaaacc   >  2:2515380‑M2/1‑3 (MQ=255)                                                                                                   cccatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgtaaacca  <  1:2136016‑M2/100‑99 (MQ=255)                                                                                                   cccatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgtaaacca  <  1:2459230‑M2/100‑99 (MQ=255)                                                                                                   cccatcatcagcgcggcgatgatcataaatgagacgtagctgccaatcatataaacctcgccgtgggcgaagttgatcatgccgataatgccgtaaacca  <  2:1556952‑M2/100‑99 (MQ=255)                                                                                                    |                                                                                                   GGCGGTAAGCCACCCGTTCGATACTCCAGCCGTAGGCGCTGGCAATGACGATTGCGCCGACGAATCCCGCAGCTACCAGCAGCCAGCCGGTATCAATGCCCATCATCATCAGCGCGGCGATGATCATAAATGAGACGTAGCTGCCAATCATATAAACCTCGCCGTGGGCGAAGTTGATCATGCCGATAATGCCGTAAA  >  NC_000913/3596112‑3596309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑