| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 41.9% | 238.5 / 312.7 | 247 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (76/67); new base C (90/13); total (166/81) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.48e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.05e-01 | |||||||||||
Only 100 of 250 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705887‑3706083 | gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:15593/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 1:101277/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1002249/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:520025/100‑3 (MQ=37) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:2448296/1‑100 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaaa < 1:1461271/100‑3 (MQ=25) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:1930134/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaac < 2:2290683/100‑7 (MQ=25) gcTGCACGCAGAGGCACAGCGCCACCGTGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:532805/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt > 1:729796/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:2767142/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt > 1:1359082/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:1831186/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:2944069/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:2847338/100‑1 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGcga > 2:2039708/1‑98 (MQ=255) agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaa < 1:356623/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCCTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:216976/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:1768781/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:1116225/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:3032276/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGAGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1798117/1‑100 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCaa > 2:2759536/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt > 2:380572/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:181666/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:1059568/100‑1 (MQ=255) gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 2:1016575/1‑100 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 2:312023/1‑100 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt < 2:2105529/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:3303309/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 2:1264582/1‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc > 1:1597698/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑g < 1:2392299/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑g < 1:1747026/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATGCAATACATTGCA‑g > 2:1510990/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑t‑‑‑t < 1:2149524/100‑1 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAACTCGTGCAAATTCAATACCTTGCA‑GA‑AT‑T‑‑‑TTc < 1:2256191/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTa > 1:1043269/1‑100 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAg < 1:312024/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGcc < 2:1650893/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGcc < 2:2773431/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGa > 1:498859/1‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGa > 1:58313/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgcg < 1:1544037/100‑1 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCa < 1:2039716/100‑1 (MQ=255) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATc > 1:669997/8‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc > 2:1326802/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc > 2:1169837/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc < 2:349710/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCa > 2:2585220/6‑100 (MQ=17) cgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCa > 1:2728472/6‑100 (MQ=21) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:738645/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAg > 1:841995/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAg > 1:2292466/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAgg > 1:3230938/4‑100 (MQ=21) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑A‑AT‑TCAACTTGTAGGCCTGATAAGCGCAGCGCATCAgg > 1:2498707/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑A‑TA‑T‑‑‑GACGTAGGCCTGATAAGCGTAGCGCATCAGGcg > 1:1298502/3‑99 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:883459/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CC‑AT‑C‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1567046/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1592886/3‑100 (MQ=18) tGCCGGATGCTGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGGGCAAAGTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2675484/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1890783/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑A‑TA‑T‑‑‑GACGTAGGCCTGATAAGCGTAGCGCATCAGGcga > 2:643025/2‑98 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCCTTGCGAATTCAATATATTGTATGG‑AA‑A‑‑‑TTC‑‑AGGCCTGATAAGCGTAGCGCATCAGGctt > 2:1444908/2‑98 (MQ=21) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:596407/2‑100 (MQ=17) gctggataaggcgTTCACGCCGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTGCA‑CA‑GC‑T‑‑‑AGCGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:129130/10‑99 (MQ=25) gctggataaggcgTTCACGCCGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTGCA‑CA‑GC‑T‑‑‑AGCGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1240779/10‑99 (MQ=25) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:2568400/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:3344299/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GG‑CT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1417800/1‑99 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:159578/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCTGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑AT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2231219/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:1717498/9‑98 (MQ=18) ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑C‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:310193/1‑98 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2591136/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:2383002/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3040246/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AG‑C‑‑‑CACGTAGGCCTGATAAGCGTAACGCATCAGGCAgtt > 1:1861010/7‑99 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:1628485/7‑96 (MQ=25) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:2172710/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑AT‑C‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:411605/7‑100 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCA‑GG‑GA‑C‑‑‑TATGTAGGCCTGATAAGCATAGCGCATCAGGCagctt > 1:749690/7‑96 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GA‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:2861830/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GA‑GA‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1205073/7‑100 (MQ=17) ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 1:1630770/1‑100 (MQ=255) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCA‑GA‑GA‑T‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattta > 2:975239/6‑99 (MQ=17) gataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑T‑‑‑TATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 1:1215784/6‑97 (MQ=21) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 1:1156189/1‑99 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:2550205/1‑100 (MQ=255) aggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑T‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAATtttgcgt > 1:201529/2‑98 (MQ=17) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgn < 1:3070430/100‑2 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 1:1241984/1‑100 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:833073/100‑1 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:3318455/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:532806/100‑1 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt < 2:2944052/100‑1 (MQ=255) cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc < 1:380573/100‑1 (MQ=255) cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc < 2:1087708/100‑1 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCGTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:1938700/100‑1 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt > 2:1407773/1‑100 (MQ=255) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705887‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |