Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,956,973:1 +A 16.3% coding (848/894 nt) ilvY ← transcriptional activator of ilvC; autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,956,9731.A16.3% 527.6 / 118.9 172coding (848/894 nt)ilvYtranscriptional activator of ilvC; autorepressor
Reads supporting (aligned to +/- strand):  ref base . (71/73);  new base A (8/20);  total (79/93)
Fisher's exact test for biased strand distribution p-value = 6.12e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.70e-01

Only 100 of 183 total aligned reads displayed.

AGGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCGGGGC  >  NC_000913/3956874‑3957072
                                                                                                    |                                                                                                   
 gggAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTc                                                                                                    >  1:315211/1‑100 (MQ=255)
 gggAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTc                                                                                                    >  1:3042325/1‑100 (MQ=255)
 gggAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTc                                                                                                    >  1:1808463/1‑100 (MQ=255)
 gggAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTc                                                                                                    >  1:2925281/1‑100 (MQ=255)
 gggAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTc                                                                                                    >  1:2891591/1‑100 (MQ=255)
 gggAAAAATGCCTGATAGCGCTTCGCATATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTc                                                                                                    >  1:2330876/1‑100 (MQ=255)
  ggAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCa                                                                                                   <  1:1976432/100‑1 (MQ=255)
     aaaaTGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGt                                                                                                <  2:3143615/100‑1 (MQ=255)
     aaaaTGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGt                                                                                                >  1:3701589/1‑100 (MQ=255)
      aaaTGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTa                                                                                               <  1:298141/100‑1 (MQ=255)
         tGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCtacatgagcc                                                                                             <  2:580547/100‑10 (MQ=255)
          gCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCg                                                                                           <  1:1167481/100‑1 (MQ=255)
           ccTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGc                                                                                          >  2:1196923/1‑100 (MQ=255)
            cTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCt                                                                                         <  1:1007808/100‑1 (MQ=255)
            cTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCt                                                                                         <  1:449673/100‑1 (MQ=255)
            cTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCt                                                                                         >  2:695326/1‑100 (MQ=255)
              gATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCttt                                                                                       >  2:3765063/1‑100 (MQ=255)
               aTAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCtaat                                                                                      <  1:2365338/100‑4 (MQ=255)
               aTAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCtaat                                                                                      <  2:2640300/100‑4 (MQ=255)
               aTAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCtaat                                                                                      <  1:2638521/100‑4 (MQ=255)
               aTAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCtttt                                                                                      <  2:162400/100‑1 (MQ=255)
                 aGCGCTTCGCTTATCAGGCCTACCTGCGGGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCtaat                                                                                      <  2:777271/98‑4 (MQ=255)
                 aGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTc                                                                                    <  1:3667903/100‑1 (MQ=255)
                  gcgcTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCtaattga                                                                                   <  1:329640/100‑7 (MQ=255)
                  gcgcTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCtaattga                                                                                   <  1:984710/100‑7 (MQ=255)
                  gcgcTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCt                                                                                   >  1:2879057/1‑100 (MQ=255)
                   cgcttctcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTg                                                                                  <  2:497718/100‑1 (MQ=255)
                   cgcttcgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTc                                                                                    <  2:1186577/98‑1 (MQ=255)
                   cgcttcgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTg                                                                                  <  1:2033279/100‑1 (MQ=255)
                    gcttcgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGACTGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTgc                                                                                 >  1:1663218/1‑100 (MQ=255)
                    gcttcgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCtaattgagg                                                                                 <  2:2548298/100‑9 (MQ=38)
                    gcttcgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTACATGAGCCGCtaattgagg                                                                                 <  1:1834361/100‑9 (MQ=38)
                    gcttcgcttATCAGGCCTACCCGCGCCACAACGTCATGTGTGGTTCGGCAAAATCTTCCAGTATGCCTCAATTAGCGGCTACATGAGCCGCtaattgagg                                                                                 <  2:2354472/100‑9 (MQ=37)
                     cttcgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTgcg                                                                                <  1:1477615/100‑1 (MQ=255)
                      ttcgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTgcgc                                                                               >  2:1945040/1‑100 (MQ=255)
                      ttcgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTgcgc                                                                               <  2:1782195/100‑1 (MQ=255)
                        cgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGcac                                                                             <  2:1378610/100‑1 (MQ=255)
                        cgcttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGcac                                                                             <  1:95240/100‑1 (MQ=255)
                          cttATCAGGCCTACCCGCGCGACAACGTCATTTGTTGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGcac                                                                             <  2:2068398/98‑1 (MQ=255)
                          cttATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGcacac                                                                           <  1:184781/100‑1 (MQ=255)
                            tATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCacacac                                                                         >  1:1329004/1‑100 (MQ=255)
                            tATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCacacac                                                                         >  1:2752267/1‑100 (MQ=255)
                               cAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGcc                                                                      >  1:2018558/1‑100 (MQ=255)
                                aGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGccc                                                                     >  1:2404509/1‑100 (MQ=255)
                                 ggCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCa                                                                    >  1:2924133/1‑100 (MQ=255)
                                   ccTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGc                                                                  >  2:3250946/1‑100 (MQ=255)
                                     tACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTc                                                                <  2:796769/100‑1 (MQ=255)
                                      aCCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCa                                                               >  1:2057840/1‑100 (MQ=255)
                                       cccGTGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCaa                                                              >  1:2618902/1‑100 (MQ=255)
                                        ccGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGTTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCaaa                                                             >  2:1746/1‑100 (MQ=255)
                                         cgcgcgACAACGTCATTTGTGGTTCGGCAAAAGCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAAc                                                            <  2:1314753/100‑1 (MQ=255)
                                           cgcgGCAACGTCGTTTGTGGTTCGGCAAAATCTTCCAGAATACCTCAATTAGCGGCTCGTGTAGACGCTTTTTCTCCGCACACACGCGCACCTCaaa                                                             >  2:1527241/1‑97 (MQ=255)
                                             cgACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCg                                                        >  1:1648195/1‑100 (MQ=255)
                                             cgACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCg                                                        >  1:1417495/1‑100 (MQ=255)
                                             cgACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCg                                                        <  2:1226970/100‑1 (MQ=255)
                                                  aCGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTtc                                                   >  1:802983/1‑100 (MQ=255)
                                                  aCGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTtc                                                   <  2:2146957/100‑1 (MQ=255)
                                                  aCGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTtc                                                   <  1:2693427/100‑1 (MQ=255)
                                                   cGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTtct                                                  <  2:2853673/100‑1 (MQ=255)
                                                   cGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTtct                                                  <  1:3250972/100‑1 (MQ=255)
                                                        tttGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCAt                                               <  1:3371404/98‑1 (MQ=255)
                                                        tttGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCCCATCg                                             >  2:2782423/1‑100 (MQ=255)
                                                          tgtgGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCCCATCGCt                                           >  1:1783365/1‑100 (MQ=255)
                                                             ggTTCGGCAAAATCTTCCAGAGTGCCTCAATTAGCGGCTCATGTATCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCcgcg                                        >  2:1391360/1‑100 (MQ=255)
                                                             ggTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTgcg                                        <  1:2195542/100‑1 (MQ=255)
                                                             ggTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTAAAACGGCGTTTTCTCATCCCTgcg                                        >  1:1081887/1‑100 (MQ=255)
                                                              gctCGGCAAAATCTTCCAGAACGCATCAATTAGCGGCTCATGTAGCCGCTTTTTTTGCGCCCACACACCCAGCTCAAACGGCGTTTTCTCATCGCt                                           >  2:628369/3‑96 (MQ=255)
                                                                  ggCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACGCGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTa                                   <  2:365728/100‑1 (MQ=255)
                                                                  ggCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTa                                   >  2:1600609/1‑100 (MQ=255)
                                                                  ggCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTa                                   >  1:483967/1‑100 (MQ=255)
                                                                   gCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTaa                                  >  2:3492125/1‑100 (MQ=255)
                                                                     aaaaTCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTaaaa                                <  2:1795028/100‑1 (MQ=255)
                                                                           ttCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCCGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAAtcatca                          >  2:319310/1‑100 (MQ=255)
                                                                           ttCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAAtcatca                          <  1:154750/100‑1 (MQ=255)
                                                                           ttCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTGTTCTCATCGCTGCGCTCTAAAAtcatca                          >  1:866183/1‑100 (MQ=255)
                                                                               aGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCAcgcg                      <  2:555502/100‑1 (MQ=255)
                                                                                gAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCgg                     <  2:3476576/100‑1 (MQ=255)
                                                                                 aaTGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCTCACACACGCCCAGCTCAAACGTCGTTTTCTCATCTCTGCGCTCTAAAATCATCACGCgg                     <  2:3802361/99‑1 (MQ=255)
                                                                                 aaTGCCTCAATTAGCGGCTCATGTAGCCGCTTGTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGt                    <  2:2910953/100‑1 (MQ=255)
                                                                                   tGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCgg                     <  1:3246449/97‑1 (MQ=255)
                                                                                   tGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTa                  <  2:1894175/100‑1 (MQ=255)
                                                                                    gCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTAc                 >  2:3092918/1‑100 (MQ=255)
                                                                                     gcagaaaaaGCGGCTACATGAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACg                >  1:611214/9‑100 (MQ=38)
                                                                                     ccTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACg                <  1:3547237/100‑1 (MQ=255)
                                                                                     ccTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACg                >  1:3238615/1‑100 (MQ=255)
                                                                                      cagaaaaaGCGGCTACATGAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGc               >  1:2188268/8‑100 (MQ=38)
                                                                                      cTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTTAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCAGTTACGc               >  2:1125784/1‑100 (MQ=255)
                                                                                        gaaaaaGCGGCTACATGAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCAc             >  2:915606/6‑100 (MQ=255)
                                                                                        cAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCAc             >  1:817035/1‑100 (MQ=255)
                                                                                        cAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCAc             >  1:617747/1‑100 (MQ=255)
                                                                                        cAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCAc             >  1:2265498/1‑100 (MQ=255)
                                                                                          aTTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCg           <  1:813825/100‑1 (MQ=255)
                                                                                           ttAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCgg          <  2:2773804/100‑1 (MQ=255)
                                                                                               cGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCg      <  2:1096420/100‑1 (MQ=255)
                                                                                                ggCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCgg     <  2:2699199/100‑1 (MQ=255)
                                                                                                 gCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCggg    >  2:360682/1‑100 (MQ=255)
                                                                                                  cTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCgggg   <  2:2403757/100‑1 (MQ=255)
                                                                                                  cTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCgggg   >  2:1370357/1‑100 (MQ=255)
                                                                                                   tCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCGGGGc  <  2:3698837/100‑1 (MQ=255)
                                                                                                   tCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCGGGGc  >  2:3435217/1‑100 (MQ=255)
                                                                                                    |                                                                                                   
AGGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCGGGGC  >  NC_000913/3956874‑3957072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: