| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 50327 = | NA (NA) | 6 (0.050) | 5/164 | NT | NA | noncoding (1/37 nt) | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 50360 = | NA (NA) | noncoding (34/37 nt) | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TTGTCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/50432‑50327‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCAG > NC_000913/50360‑50457 TTGTCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCA > 2:1325514/1‑100 TCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCC < 2:2955498/100‑1 TCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCC < 2:1470138/100‑1 TCCAGCCGTCGAACCGGCATAAGGAGTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCC < 1:635159/100‑1 CCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCG > 1:1400433/1‑100 CCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCG > 1:42098/1‑100 AGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCGGC < 2:46948/100‑1 GGCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGC > 1:750690/1‑100 GCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCT > 1:4016/1‑100 GCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGC > 1:2331191/1‑99 CGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGG > 2:477698/1‑100 GGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGA > 1:1416517/1‑100 GATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAAACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGAC > 1:1814869/1‑100 cttgTCCGGCCTTACTATATCAGGCTGTGTTTAAGACGCAGTCGTTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCC < 2:1001241/96‑1 ATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAG > 1:2784615/1‑100 ATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAG > 1:2453728/1‑100 ATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAG < 2:3780644/100‑1 ATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAG > 2:1950120/1‑100 ATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAG > 2:1942673/1‑100 TCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGC < 1:3437087/100‑1 TCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGC > 1:3578938/1‑100 CCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCG < 2:2455526/100‑1 CGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGGCGGCTGGACAAAATACTGTTTATCTTCCCAGCGC > 2:1782318/1‑100 CGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGC < 1:197217/100‑1 GGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGGTTCGCCCAAATCCTTATGCCGGTTCGACTGCTGGACAAAATACTGTTTATCTTCCCAGCGCA < 2:1550458/100‑1 GGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCA < 2:2730609/100‑1 GGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCA < 1:1570917/100‑1 GCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCAG < 2:3514159/100‑1 GCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGCTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCA < 2:3180621/99‑1 TTGTCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/50432‑50327‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCAG > NC_000913/50360‑50457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |