New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1040547 =	NA (NA)	22 (0.180)	6/158	NT	NA	noncoding (5/36 nt)	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	1040579 =	NA (NA)					intergenic (+42/‑38)	cbdX/appA	putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase

AATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1040655‑1040547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT  >  NC_000913/1040579‑1040677                                                                                                                                                                                                                  AATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCC                                                                                                              <  2:2952329/100‑1    CAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA                                                                                                           <  2:804433/100‑1    CAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA                                                                                                           <  2:1774474/100‑1    CAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA                                                                                                           >  2:1059652/1‑100     AGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGGTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCAT                                                                                                          >  2:2748185/1‑100     AGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCAT                                                                                                          >  2:3413709/1‑100     AGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCAT                                                                                                          >  1:1442884/1‑100     AGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCAT                                                                                                          >  1:3104787/1‑100      GAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATC                                                                                                         >  2:91369/1‑100      GAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATAACTGAGATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATC                                                                                                         >  2:1108249/1‑100        AGAGATGAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAG                                                                                                       >  1:3618880/1‑100        AGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAG                                                                                                       <  1:3376269/100‑1         GAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                                      >  2:2156241/1‑100         GAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                                      >  2:333097/1‑100         GAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                                      >  1:2018035/1‑100         GAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                                      <  2:525797/100‑1          AGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC                                                                                                     <  1:833980/100‑1           GATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTCTTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG                                                                                                      >  2:1615849/1‑98                AAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGtcta                                                                                                  >  2:2786280/1‑93                                                TTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCG                                                               >  1:2772802/1‑100                                                                           ATTGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA                                    >  1:644109/1‑100                                                                             TGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGCAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATC                                  >  2:3653019/1‑100                                                                             TGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATC                                  >  1:1124936/1‑100                                                                              GCCTGATGCGATGCTAATGCGCCGCATCAGGCACTCAATAATGTCAGATATGAAAAGCGGAAACCTATCGAGGAAAGCGATCTTAATCCCATTTTTATCT                                 >  2:701191/1‑100                                                                              GCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT                                 >  1:440271/1‑100                                                                              GCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT                                 >  1:2160421/1‑100                                                                              GCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT                                 >  2:3564898/1‑100                                                                              GCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT                                 >  2:1371335/1‑100                                                                              GCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT                                 >  1:1359299/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCCGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  2:3174701/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGCTGAAAGCGATCTTAATCCCATTTTTATCTC                                >  1:668933/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  2:664057/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  2:347451/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  2:87075/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  2:1914603/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  1:1421442/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  1:2468893/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  1:1008746/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  1:603034/1‑100                                                                               CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC                                >  1:3506165/1‑100                                                                                 TGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTT                              >  1:889247/1‑100                                                                                                     GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCA          <  1:216101/100‑1                                                                                                     GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCA          <  1:3014496/100‑1                                                                                                      CATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAA         >  1:1285869/1‑100                                                                                                        TCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATC       >  1:2632401/1‑100                                                                                                         CAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTACTCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCT      <  2:1987046/100‑1                                                                                                          AGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAAGCT      <  2:2592282/99‑1                                                                                                           GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGC    >  2:1572566/1‑100                                                                                                           GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATACCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGC    >  2:3791234/1‑100                                                                                                            GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCA   <  1:1230674/100‑1                                                                                                             CAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGGGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT  >  2:2110794/1‑100                                                                                                                                                                                                                  AATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1040655‑1040547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT  >  NC_000913/1040579‑1040677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.