| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1243718 = | 108 (0.790) | 18 (0.140) | 11/164 | NT | 15.2% | coding (539/612 nt) | emtA | lytic murein endotransglycosylase E |
| ? | NC_000913 | 1243755 = | 102 (0.810) | coding (576/612 nt) | emtA | lytic murein endotransglycosylase E | |||||
GGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1243820‑1243718‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgctaTATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGC > NC_000913/1243755‑1243853 GGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCG < 2:3144619/100‑1 GAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGC < 2:923043/100‑1 GAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTAGAGATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGC > 2:561672/1‑100 TGCTCAAGTTTGTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCG > 1:2721704/1‑100 TTGTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTG > 2:1558719/1‑100 TTGTAGAGATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTG > 1:2008196/1‑100 GTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTC > 2:2167474/1‑100 GTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTC > 2:2166854/1‑100 GTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTC > 1:1084786/1‑100 TAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCC > 1:1511277/1‑100 TAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCC > 2:3308079/1‑100 AGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTACACGCGCTGTAAATCAGTCGCGCACTTTGTCCG > 2:3046691/1‑100 GATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGC > 2:1115597/1‑100 GATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGC > 1:3291094/1‑100 GATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGCAAATCAGTCGCGCACTTTGTCCGC > 1:1578093/1‑100 ATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCT > 2:3293475/1‑100 ATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATGTCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATGAGTCGGGCACTTTGTCCGgt > 2:3129506/1‑96 TAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTT > 1:2136506/1‑100 TAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTT > 1:1415716/1‑100 GAGCCTGCGGCGCAGGGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGCAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGG < 2:1578083/100‑1 GGTGATTTCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAG < 2:2136493/100‑1 CGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATA > 1:1888815/1‑100 GCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAA > 1:1884703/1‑100 CTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCC < 1:518001/100‑1 CTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCC > 2:1611497/1‑100 ATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGC < 1:3570313/100‑1 ATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGC < 1:23021/100‑1 ATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGC < 1:1963774/100‑1 GGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTAGATATAGCGCGGAGCCTGCGGCGCAGGGTGATTTCGCGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1243820‑1243718‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgctaTATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGC > NC_000913/1243755‑1243853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |