| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1245636 | 84 (0.610) | 15 (0.120) | 7/160 | NT | 15.7% | intergenic (+36/+43) | ycgY/treA | uncharacterized protein/periplasmic trehalase |
| ? | NC_000913 | = 1245657 | 86 (0.700) | intergenic (+57/+22) | ycgY/treA | uncharacterized protein/periplasmic trehalase | |||||
ATCTTCGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1245529‑1245636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacaacgTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTATTGCGC < NC_000913/1245657‑1245559 ATCTTCGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGC > 2:3641277/1‑100ATCTTCGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGC < 1:3407410/100‑1 TCTTCGGCAACCACGTATGGCAAACTTTTGCGCAATACTTCCCGCCAGCACTTGAAATACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGC < 1:2301843/99‑1 CTTCGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCG < 1:670108/100‑1 TTCGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGA > 2:986863/1‑100 TTCGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGA < 2:3449122/100‑1 TCGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGAC < 2:2639187/100‑1 CGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACA < 2:3648559/100‑1 CGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACA > 2:34234/1‑100 ACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATT < 2:2800824/100‑1 TGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGG < 1:2764962/100‑1 CGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCG < 1:3562274/100‑1 TACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTC < 1:671094/100‑1 ACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCG < 1:1218500/100‑1 ACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCG < 1:7313/100‑1 ACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCG < 1:2902050/100‑1 CTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGG < 1:686109/100‑1 CTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGG < 1:1138611/100‑1 CTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGG < 2:98175/100‑1 TTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGC < 2:1325930/100‑1 TTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGC < 2:1594113/100‑1 TTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGC < 1:3464986/100‑1 TTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGC < 1:2334485/100‑1 TCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGG < 2:107705/98‑1 CCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAG < 1:539149/100‑1 CCGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAG > 1:3576728/1‑100 CGACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGT < 2:2240337/100‑1 GACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTA > 1:3791311/1‑100 GACAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTA > 1:2119430/1‑100 CAACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTATT > 2:3525170/1‑100 AACGTCAGTCGGCTTCTCCGGATGTCGTTGTCGGCAGATATCACCATAGCTATGGTGTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTATTG < 2:1541285/100‑1 ACGTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTATTGC < 1:1984127/100‑1 CGTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTATTGCG > 1:344053/1‑100 GTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTATTGCGC > 2:2458033/1‑100 ATCTTCGGCAACCACGTATGGCAAACATTTGCGCAATACTTCCCGCCAGGACTTGAAAAACCGTCTGTGTAGAAAAAACCATAGCTATGGTGTTATCTGCCGACAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1245529‑1245636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacaacgTCATTCGGCTTCTCCGGATGGCGTTGTCGGCAGATAACACCATAGCTATGGTTTTTTCTACACAGACGGTTTTTCAAGTCCTGGCGGGAAGTATTGCGC < NC_000913/1245657‑1245559 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |