| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2360174 = | 102 (0.750) | 16 (0.130) | 7/164 | NT | 15.3% | intergenic (‑22/+35) | rhmT/rhmD | putative L‑rhamnonate transporter/L‑rhamnonate dehydratase |
| ? | NC_000913 | 2360202 = | 83 (0.660) | intergenic (‑50/+7) | rhmT/rhmD | putative L‑rhamnonate transporter/L‑rhamnonate dehydratase | |||||
GCTTGATAAACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAACGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2360278‑2360174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcccGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCAT > NC_000913/2360202‑2360300 GCTTGATAAACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAA > 1:130524/1‑100GCTTGATAAACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAA > 2:3250613/1‑100GCTTGATAAACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAA > 1:1991067/1‑100 CTTGATAAACCCGGTTTTGGCGTCGAACTCACTCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAAC < 2:2864225/100‑1 TGATAAACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAACGC > 2:623385/1‑100 TGATAAACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAACGC > 1:322363/1‑100 TGATAAACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAACGC > 2:2811021/1‑100 AACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCCCGCCGGGCGTTGCTGTGACAACGGTAACGCCCG < 1:3704718/98‑1 ACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAACGCCCGGAG > 1:1184553/1‑100 CACTCCGGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGG > 2:402560/1‑100 CTCCGGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGT > 1:26480/1‑100 CCGGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTT > 1:1361025/1‑100 CCGGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTT > 1:1202215/1‑100 CCGGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTT > 2:2128046/1‑100 CGGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTA > 2:3021445/1‑100 CGGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTA > 1:484481/1‑100 CGGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTA > 1:685563/1‑100 GGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTTCAATCGCAGTCACGATTGGGTTCGACGCCAAAACCGGGGTT > 2:1386110/1‑98 GGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTAT > 2:2621089/1‑100 GGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTAT > 1:1170815/1‑100 GGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTAT > 2:2429712/1‑100 GGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTAT > 1:2460342/1‑100 GGGCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTAT > 1:1000442/1‑100 GCGTTGCTGTGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCA > 1:241895/1‑100 TGACAACGGTAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGAT > 1:370231/1‑100 ACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACG < 2:3024276/100‑1 ACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACG > 1:2140888/1‑100 CGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGCTTGAGTTCGACGCCAAAACCGGGATTATCAAGCACTGATTTATGCATAC > 2:1640977/1‑98 CGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGA > 1:2401050/1‑100 GCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATGGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATAC < 2:378105/97‑1 CCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACC > 1:2820207/1‑100 CGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCAT < 2:67334/100‑1 CGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGGTTATCAAGCACTGATTTATGAATACGACCAT > 1:196/1‑100 CGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGACAAAACCGGGTTTATCGAGCACTGATTGATGAATACGACC < 2:1460165/98‑1 GCTTGATAAACCCGGTTTTGGCGTCGAACTCAATCGTGACTGCAATTTGAAACGCCCCTACAGCCACTAATCACTCCGGGCGTTGCTGTGACAACGGTAACGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2360278‑2360174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcccGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCAT > NC_000913/2360202‑2360300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |