New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3525557NA (NA)13 (0.100) 11/164 NT NA noncoding (80/98 nt) RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3525568 NA (NA)noncoding (91/98 nt) RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

TTTGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3525452‑3525557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAACA  <  NC_000913/3525568‑3525471
                                                                                                                                                                                                            
TTTGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAG                                                                                                          <  2:2011978/100‑1
  ttaTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAGCGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATATATTGCAGAAACGCCATAGGCC                                                                                                        <  2:1554609/97‑1
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACTAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                        <  2:2085673/100‑1
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                        >  2:3317524/1‑100
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                        >  1:1513674/1‑100
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                        >  2:1654267/1‑100
  TGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCC                                                                                                        <  2:2192447/100‑1
    CTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAACCCCCATAAGCCTG                                                                                                      >  1:2218353/1‑100
    CTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTG                                                                                                      >  2:3603317/1‑100
    CTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTG                                                                                                      >  1:1855434/1‑100
    CTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATAGTGAAAACTCAATAAATTTCAGAAACCACATAAGCCTG                                                                                                      >  2:1018026/1‑100
     TGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGA                                                                                                     >  1:3518406/1‑100
     TGACAAAGTGCACTTGTTTACGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGA                                                                                                     >  1:2071158/1‑100
      GACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGAT                                                                                                    >  2:792076/1‑100
                     TTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTATCA                                                                                     <  2:318616/100‑1
                     TTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTATCA                                                                                     <  1:3465094/100‑1
                        ATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTATCAGGC                                                                                  <  2:2621859/100‑1
                        ATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTATCAGGC                                                                                  <  2:3051285/100‑1
                         TGCCGGATACGGCGTGAACGCGTTATCCGGATAACAAAATCGTGAAAACTCAATAAATCGCAGAAGCCCCATAAGCCTGATGCACAATGTTTATCAGGCT                                                                                 <  2:2088126/100‑1
                          GCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATGCACAATGTTTATCAGGCTT                                                                                <  1:1194512/100‑1
                                                            AAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGAT                                              >  1:2781607/1‑100
                                                                               AAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGC                           >  1:1354883/1‑100
                                                                                          ACCCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGT                >  1:2896097/1‑100
                                                                                            CCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCCCGATTTTGTTAGCCGGATAACGCGTTCACGCCGTAT              >  2:3613414/1‑100
                                                                                            CCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTAT              >  1:346121/1‑100
                                                                                            CCCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTAT              >  2:2360965/1‑100
                                                                                             CCATAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATC             >  2:2436555/1‑100
                                                                                                TAAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGG          >  1:1134984/1‑100
                                                                                                 AAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTTACGCCGTATCCGGC         >  1:1823127/1‑100
                                                                                                 AAGCCTGATAAACATTGTGCATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGC         >  2:2101154/1‑100
                                                                                                   GCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCAAGATTTTGTTAGCCGGATAACGCGTTCACGACGTATAAGGCAT       >  1:714576/1‑100
                                                                                                    CCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATA      <  1:2174453/100‑1
                                                                                                    CCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATA      >  2:1575974/1‑100
                                                                                                    CCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATA      >  2:1504968/1‑100
                                                                                                    CCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATA      >  2:3518379/1‑100
                                                                                                    CCTGATAAACATTGTGCATCAGGCTTATGGGATTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGACGGATAACGCGTTCACGCCGTATCCGGCATA      >  2:612955/1‑100
                                                                                                     CTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAA     <  1:2603169/100‑1
                                                                                                     CTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAA     >  1:1504734/1‑100
                                                                                                      TGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAA    >  1:2253246/1‑100
                                                                                                      TGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAA    >  1:1341854/1‑100
                                                                                                       nATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAAC   >  1:1335361/2‑100
                                                                                                       GATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAAC   >  2:965968/1‑100
                                                                                                       GATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAAC   <  1:2388748/100‑1
                                                                                                       GATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAAC   >  1:310465/1‑100
                                                                                                       GATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAAC   >  1:3679231/1‑100
                                                                                                        ATGCACAATGTTTATCAGGCTTATGGTGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAACA  <  2:2725876/100‑1
                                                                                                                                                                                                            
TTTGCTGACAAAGTGCACTTGTTTATGCCGGATACGGCGTGAACGCGTTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3525452‑3525557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGCATAAACA  <  NC_000913/3525568‑3525471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.