| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4008400 | NA (NA) | 17 (0.140) | 10/164 | NT | NA | noncoding (4/34 nt) | REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4008430 | NA (NA) | noncoding (34/34 nt) | REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4008302‑4008400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGCAA < NC_000913/4008430‑4008325 TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAG < 2:2345062/100‑1TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAG > 1:3174750/1‑100TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAG > 1:2036073/1‑100 TGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTC > 2:806899/1‑100 gggtAAGTGGATTGATGGTTTTGCCGGGGCGTTATGTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCG < 2:1484984/96‑1 GGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCn < 1:1476667/100‑2 GGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCG < 1:882529/100‑1 GGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCG > 1:597083/1‑100 GGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCG > 1:2621000/1‑100 GGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCG < 1:1788817/100‑1 GCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGG > 2:1374141/1‑100 CGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGA < 1:3206666/100‑1 CGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGG < 1:1135241/99‑1 GAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGAT < 1:2350437/100‑1 AAGTGTATTTATGTTTTTTCCGTGGCGTTATTTGCCTGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCACACGCGTCTTCAGAGTAAGTCGGA < 2:3320187/98‑1 CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTTGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC < 2:2673950/100‑1 CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC < 1:3027289/100‑1 CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC < 1:2522465/100‑1 CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC < 1:2510990/100‑1 CCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCC < 1:67536/100‑1 GGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGA < 1:633253/100‑1 GGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGAC < 1:2379810/100‑1 GGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGAC < 2:2054119/100‑1 GGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCG < 2:2886073/98‑1 GGGCGTTACTTGCTGGATTTGGCAGTCATTTGATTATTTCGCGGTGAGGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGA < 2:3507934/99‑1 GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGACT < 1:3442220/100‑1 ggGTTAGTTGCCGGATTTGGCATTCATTTGATTATGTCGCGGTGATGCCAGACGCGCCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGAC < 2:2087131/96‑1 CGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGACTTA < 2:2651309/100‑1 GTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGACTTAC < 1:734506/100‑1 TATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGACTTACTC < 1:1492073/100‑1 TCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATC < 1:1551041/100‑1 GAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATA > 2:3376478/1‑100 TAAGTCGGATAAGGCGTTTACGCCGCATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACG > 2:2741190/1‑100 AAGTCGGATAAGGCGTTTACGCCGCATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGC > 2:538753/1‑100 GTCGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCC > 1:3464483/1‑100 TCGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCC < 2:2695781/100‑1 GGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGG > 2:1170246/1‑100 GGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGG > 2:2825643/1‑100 GGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACAGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCC > 1:3580142/1‑98 GGATACTGCGTAAACGCCGAATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGGCAAATCCGGCAAATAACGCCCCGG < 2:1015338/100‑1 GATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGC > 1:88547/1‑100 GATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGC > 1:3372444/1‑100 TGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGCAA > 2:2687875/1‑100 TGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGCAA > 1:3057716/1‑100 TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4008302‑4008400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCGTAAACGCCTTATCCGACTTACTCTGAAGACGCGTCTGGCATCACCGCGAAATAATCAAATGAATGCCAAATCCGGCAAATAACGCCCCGGCAA < NC_000913/4008430‑4008325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |