New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4415961	NA (NA)	17 (0.130)	12/166	NT	NA	noncoding (4/34 nt)	REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4415991	NA (NA)					noncoding (34/34 nt)	REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences

ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4415863‑4415961 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACAC  <  NC_000913/4415991‑4415889                                                                                                                                                                                                            ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGG                                                                                                        >  1:1290068/1‑100   TTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGAAGCGACGCTGGTTTTGATTAACTAAATGAAATATGTGAAAATTGTAGG                                                                                                        <  2:2655276/98‑1    TATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG                                                                                                     >  2:3040933/1‑100    TATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCC                                                                                                      >  2:655820/1‑99     ATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGG                                                                                                    >  1:3466819/1‑100     ATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGG                                                                                                    <  2:3693207/100‑1     ATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGG                                                                                                    <  1:3450511/100‑1      TTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGTGTATACGACTGATGCGACGCTGGTTTCGATTAACTAATTGACATATGTGAAAATTGTAGGCCGG                                                                                                    <  2:2222739/99‑1      TTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGCAAATTGTAGGCCGGA                                                                                                   >  1:3763297/1‑100                              TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC                                                                           <  1:181419/100‑1                              TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC                                                                           <  2:1669128/100‑1                              TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC                                                                           <  2:1593113/100‑1                              TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCC                                                                              <  2:2765022/97‑1                               GTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCC                                                                          <  1:648315/100‑1                                TGTGTAAGCGTATACGACTGATGCGACGCTTGTTTCGATTAACTAAATGACATATCTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCC                                                                          <  2:2552515/99‑1                                TGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCT                                                                         <  1:2804750/100‑1                                 GTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTA                                                                        <  2:360622/100‑1                                  TGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTAC                                                                       <  1:854265/100‑1                                  TGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTAC                                                                       <  2:3466792/100‑1                                    TAAGCGTATACGTCTGATGCGACGATGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTAC                                                                       <  1:2390109/98‑1                                      AGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATT                                                                   <  1:1154428/100‑1                                           ATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCAC                                                              <  1:1327688/100‑1                                            TACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACA                                                             <  1:1793637/100‑1                                                   GATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTT                                                        <  1:1518744/98‑1                                                           GCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTA                                              <  1:1108325/100‑1                                                                                             ATTGTAGGCCGGATGCTGCGCGATCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGC              <  2:1959082/98‑1                                                                                                    GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACA     <  2:3773687/100‑1                                                                                                    GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACAC      <  1:3796046/99‑1                                                                                                     CCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACAC    >  2:2209700/1‑100                                                                                                     CCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACAC    >  1:3142713/1‑100                                                                                                     CCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACAC    >  1:1977458/1‑100                                                                                                      CGGATGCGGCGCGAGCGCCTTGTCCGGCCTACCATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACA   >  1:3621904/1‑100                                                                                                      CGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACA   <  1:1668460/100‑1                                                                                                      CGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACA   <  1:1060636/100‑1                                                                                                      CGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACA   <  2:713112/100‑1                                                                                                       GGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACAC  >  2:1539166/1‑100                                                                                                                                                                                                            ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4415863‑4415961 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACAC  <  NC_000913/4415991‑4415889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.