| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4531468 = | 144 (1.050) | 15 (0.120) | 7/168 | NT | 10.3% | coding (184/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain |
| ? | NC_000913 | 4531508 = | 125 (0.970) | coding (144/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TCATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4531569‑4531468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGC > NC_000913/4531508‑4531603 TCATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGCTGCGCTGCG < 2:960363/100‑1TCATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCG < 1:2041156/100‑1TCATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCG > 1:3407763/1‑100TCATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCG < 1:4845/100‑1TCATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCG > 2:3212283/1‑100 ATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGAC < 2:72529/100‑1 ATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGAC < 2:3369531/100‑1 TGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATT > 2:767212/1‑100 GAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGC > 1:2161941/1‑100 AATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCA > 1:1308705/1‑100 TGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACA > 1:1497442/1‑100 CGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCACGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTCAATTCGCACCGC > 2:982018/1‑99 CGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCA > 1:1351205/1‑100 CGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCA > 2:3152995/1‑100 CGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCA > 2:2070849/1‑100 CGTCGCGCGCTACGGTAGTGATAAACCCGATGCGC‑GCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCAT > 1:2703244/1‑100 GTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGTGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCA > 2:1605072/1‑99 GTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCAT > 2:18294/1‑100 GTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCAT > 1:980404/1‑100 GTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCAT > 1:595225/1‑100 GTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCAT > 1:1754413/1‑100 CGCGCTACGGTAGTGATAAACCCGATGCGCTGCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACG > 1:3068400/1‑100 GCGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCG < 1:1865583/100‑1 CGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGC > 2:160982/1‑100 CGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGC > 2:1173149/1‑100 CGACGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGC > 1:3356969/1‑100 TCATGCTGTGCGAATTCAGGCGTCAGGCAAAAGAGGTCTGGCGAGACAGGCTTGGGAATGTCGTCGCGCGCTACGGTAGTGATAAACCCGATGCGCTGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4531569‑4531468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacGACATTCCCAAGCCTGTCTCGCCAGACCTCTTTTGCCTGACGCCTGAATTCGCACAGCATGACGTCAGCGACAGCGTTTTCGTGTCCTGAAATCGC > NC_000913/4531508‑4531603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |