New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 349759141 (1.030)23 (0.180) 3/164 NT 15.8% noncoding (155/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 349869 116 (0.920)noncoding (265/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences

Only 100 of 191 total aligned reads displayed.

GTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGAC  >  NC_000913/349660‑349857
                                                                                                   |                                                                                                  
    gATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGa                                                                                                >  2:1612229/1‑100 (MQ=255)
     aTAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGa                                                                                                <  2:1370297/99‑1 (MQ=40)
     aTAAGACGGAGGGCATTGCATCCGACAACCGATGCCTGATGTGCCGCTGATGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGAc                                                                                               <  2:3595302/100‑1 (MQ=14)
      tAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACg                                                                                              <  1:3596691/100‑1 (MQ=40)
      tAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACg                                                                                              >  2:1779244/1‑100 (MQ=255)
       aaGACGGCGGGCATCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGc                                                                                             <  2:3207450/100‑1 (MQ=255)
       aaGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGTACTGAACTGTAGGTCGGATAAGACGc                                                                                             <  1:3299312/100‑1 (MQ=255)
        aGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCa                                                                                            >  1:3642096/1‑100 (MQ=255)
        aGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACGGAACTGTAGGTCGGATAAGACGc                                                                                             >  1:2979179/1‑99 (MQ=255)
         gACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCAt                                                                                           >  2:979399/1‑100 (MQ=40)
         gACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCAt                                                                                           >  1:3801153/1‑100 (MQ=40)
         gACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCAt                                                                                           >  1:1302653/1‑100 (MQ=255)
             gATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCg                                                                                       >  2:2374845/1‑100 (MQ=38)
             gATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCg                                                                                       <  2:1131866/100‑1 (MQ=38)
                ggCGTGGCATCCGACAACCGATGCCTGATGCGGCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCg                                                                                    <  2:2685522/100‑1 (MQ=16)
                 gCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCg                                                                                    <  2:627565/99‑1 (MQ=32)
                 gCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTCATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGAATAGCGTCGc                                                                                   >  2:3378066/1‑100 (MQ=12)
                  cGTCGCGTCCCACACCCGATGCCTGGTGCGCCGCTGACGTGACTTATCAGTCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGc                                                                                   <  2:1485603/99‑1 (MQ=11)
                   gTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGc                                                                                   <  2:145431/98‑1 (MQ=32)
                    tCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATc                                                                                >  1:846875/1‑100 (MQ=33)
                     cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATgcgacgctatgcgtcttatcc                                                                               <  1:241499‑M1/100‑22 (MQ=255)
                     cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATaagacgctatgcgtcttatcc                                                                               <  1:3509282‑M1/100‑22 (MQ=255)
                     cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATgcgacgctatgcgtcttatcc                                                                               <  1:2349402‑M1/100‑22 (MQ=255)
                     cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATgcgacgctatgcgtcttatcc                                                                               <  1:2668529‑M1/100‑22 (MQ=255)
                     cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATgcgacgctatgcgtcttatcc                                                                               <  2:3522549‑M1/100‑22 (MQ=255)
                     cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATgcgacgctatgcgtcttatcc                                                                               <  2:846866‑M1/100‑22 (MQ=255)
                     cGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATgcgacgctatgcgtcttatcc                                                                               <  1:816737‑M1/100‑22 (MQ=255)
                      gCATCCGACAACCGATGCCTGATGCGCCGCGGACGTGACTTAACAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCa                                                                                  <  2:614905/96‑1 (MQ=12)
                       taTCCGACAACCGATGCCTGATCCGCCGCTGACGTGACTTATCAGGCCTACGGGGAGCACTGAACAGTAGCGCGCATAAGACGCATAGCGCCGCATc                                                                                >  2:2223317/2‑97 (MQ=11)
                       cATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGa                                                                             <  2:1353749/100‑1 (MQ=32)
                        aTCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATgcgacgctatgcgtcttatccgac                                                                            <  1:2625271‑M1/100‑25 (MQ=255)
                        aTCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGAc                                                                            <  2:105737/100‑1 (MQ=32)
                         tCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATaagacgctatgcgtcttatccgacc                                                                           <  1:626358‑M1/100‑26 (MQ=255)
                          ccGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGACCTGAACTGTAGGTCGGATgcgacgctatgcgtcttatccgacct                                                                          <  2:2875432‑M1/100‑27 (MQ=255)
                          ccGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGAGgcgacgctatgcgtcttatccgacct                                                                          <  1:1598813‑M1/100‑27 (MQ=255)
                           cGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAAc                                                                         >  1:3157234/1‑100 (MQ=33)
                            gACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAAcc                                                                        <  1:1120562/100‑1 (MQ=33)
                             aCAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCg                                                                       <  1:1918983/100‑1 (MQ=33)
                              cAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGa                                                                      <  1:171349/100‑1 (MQ=32)
                                aCCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATg                                                                    >  1:121337/1‑100 (MQ=33)
                                   gATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCt                                                                 >  1:2801020/1‑100 (MQ=33)
                                      gCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGAt                                                              >  1:3649077/1‑100 (MQ=33)
                                      gCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGAt                                                              <  2:1392163/100‑1 (MQ=32)
                                        cTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATgc                                                            <  1:2015926/100‑1 (MQ=32)
                                         tGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGc                                                                   >  2:2321575/1‑92 (MQ=33)
                                         tGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCGTg                                                                >  2:576911/1‑95 (MQ=17)
                                         tGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATgcg                                                           >  1:2852743/1‑100 (MQ=33)
                                          gATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATgagc                                                          >  2:1550775/1‑100 (MQ=18)
                                            tGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGcgccg                                                        <  1:1806394/100‑1 (MQ=32)
                                             gcgcCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGcgccgc                                                       >  1:3203845/1‑100 (MQ=33)
                                             gcgcCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGcgccgc                                                       >  1:767201/1‑100 (MQ=33)
                                              cgccgcTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCt                                                      <  2:2852723/100‑1 (MQ=32)
                                              cgccgcTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCt                                                      >  2:2950536/1‑100 (MQ=33)
                                              cgccgcTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCt                                                      >  2:1996401/1‑100 (MQ=33)
                                                ccgcTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGa                                                    <  1:2814976/100‑1 (MQ=33)
                                                  gcTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGAcg                                                  >  1:2403548/1‑100 (MQ=33)
                                                  gcTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGAcg                                                  <  2:1965563/100‑1 (MQ=32)
                                                    tGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGAcgcg                                                <  2:3702491/100‑1 (MQ=32)
                                                        gTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACtt                                            <  1:94995/100‑1 (MQ=31)
                                                        gTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACtt                                            <  1:697013/100‑1 (MQ=31)
                                                                       tACGGGGTGAACTGAACTGTAGGTGGGATgcgacgctatgcgtcttatccgacctacagttcagttcgccccgtaggcctgataagtcgcgtcagcggcg                             <  2:3253827‑M1/100‑72 (MQ=255)
                                                                           gggTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCa                         >  2:1684814/1‑100 (MQ=31)
                                                                           gggTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGACGCGCCGCTGACACGACTTATCAGACCTACggggcga                          >  2:2887313/1‑96 (MQ=1)
                                                                            ggTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCGTACGGGGTGCAc                        >  2:873602/1‑100 (MQ=17)
                                                                            ggTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCAc                        >  1:3292579/1‑100 (MQ=32)
                                                                            ggTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCAc                        <  1:3373935/100‑1 (MQ=32)
                                                                            ggTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCAc                        >  1:3167100/1‑100 (MQ=32)
                                                                              tGCACTGAACTGTAGGTCGGATAAGACGGATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTg                      <  2:2638533/100‑1 (MQ=17)
                                                                               gCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGGCAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGa                     >  2:1823583/1‑100 (MQ=17)
                                                                               gCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGa                     >  1:1679581/1‑100 (MQ=33)
                                                                               gCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGa                     <  1:458206/100‑1 (MQ=33)
                                                                               gCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGa                     >  1:2488975/1‑100 (MQ=32)
                                                                               gCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCAACTTATAAGGCCTACGGGGCGCACTGa                     >  2:2631907/1‑100 (MQ=255)
                                                                                 aCTGACCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAAc                   <  2:3796867/100‑1 (MQ=18)
                                                                                 aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGGAc                   >  1:3668423/1‑100 (MQ=18)
                                                                                 aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAAc                   <  1:1137538/100‑1 (MQ=33)
                                                                                 aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAAc                   <  1:2027745/100‑1 (MQ=33)
                                                                                  ctaaaCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAAc                   <  2:47690/96‑1 (MQ=17)
                                                                                    gAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGt                >  1:3736572/1‑100 (MQ=33)
                                                                                     aaCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAAACGATGCCTGATGCGCCGCGGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTa               <  1:416438/100‑1 (MQ=12)
                                                                                      aCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGACGCTGACGCGACTTATCAGGCGTACGGGGTGCACTGAACTGTAg              >  2:3400886/1‑100 (MQ=12)
                                                                                       cTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTa               <  2:69001/98‑1 (MQ=33)
                                                                                        tGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCGTACGGGGTGCACTGAACTGTAGGt            >  2:3028031/1‑100 (MQ=17)
                                                                                        tGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGt            >  1:259129/1‑100 (MQ=33)
                                                                                          tAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCg          <  2:3658095/100‑1 (MQ=33)
                                                                                           ttgTCGGATGCGACGCTATGCGTCTTATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCg          >  2:251679/3‑99 (MQ=11)
                                                                                            ggTCGGATgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcgga        >  1:1770269‑M1/1‑8 (MQ=255)
                                                                                            ggTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGa        >  2:1394802/1‑100 (MQ=32)
                                                                                            ggTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGGCGGa        >  1:566280/1‑100 (MQ=17)
                                                                                            ggTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGAGGCGCCGCTGACGCGACTTATCAGGCCTCCGGGGTGCACTGAACTGTAGGTCGGa        >  2:1514828/1‑100 (MQ=12)
                                                                                             gTCGGATgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggat       >  1:1505865‑M1/1‑7 (MQ=255)
                                                                                             gTCGGATgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggat       >  2:1409639‑M1/1‑7 (MQ=255)
                                                                                             gTCGGATgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcg          >  2:3157210‑M1/1‑7 (MQ=255)
                                                                                             gTCCGATgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcgg         <  2:1332088‑M1/98‑92 (MQ=255)
                                                                                              tcgactAAGAGGCACACCCTCGCATCCGACAACCGACGTCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGAt       <  2:524816/94‑1 (MQ=11)
                                                                                               cGGATgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggatgc     <  1:2674425‑M1/100‑96 (MQ=255)
                                                                                                ggATgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtgggatgcg    >  2:2801000‑M1/1‑4 (MQ=255)
                                                                                                 gATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGa   >  1:2233207/1‑100 (MQ=33)
                                                                                                  aTgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggatgcgac  <  1:2931383‑M1/100‑99 (MQ=255)
                                                                                                  aTgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggatgcga   <  1:3774093‑M1/99‑98 (MQ=255)
                                                                                                   |                                                                                                  
GTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGAC  >  NC_000913/349660‑349857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.