New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3139625 =NA (NA)15 (0.120) 6/164 NT NA noncoding (5/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3139655 = NA (NA)noncoding (35/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 221 total aligned reads displayed.

AGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCT  >  NC_000913/3139526‑3139724
                                                                                                   |                                                                                                   
aGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAgg                                                                                                     >  2:2151775/1‑100 (MQ=255)
aGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAgg                                                                                                     >  1:2758893/1‑100 (MQ=255)
  ctgcgccaaatggattacgacattaccagcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGcc                                                                                                   <  1:685974‑M1/3‑1 (MQ=255)
  ctgcgccaaatggattacgacattaccagcgcgtaatgattagctttcgtaggcctgataagtcgcggcagcatcgcatcaggcattgtgcacgattGcc                                                                                                   >  2:2011790‑M1/98‑100 (MQ=255)
   tgcgccaaatggattacgacattaccagcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcagtgtgcacgattGCCg                                                                                                  >  2:1822075‑M1/97‑100 (MQ=255)
    gcgccaaatggattacgacattaccagcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCgg                                                                                                 <  2:505674‑M1/5‑1 (MQ=255)
        cATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATaa                                                                                             <  2:788836/100‑1 (MQ=255)
         aTGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAg                                                                                            >  1:2793259/1‑100 (MQ=255)
          tGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAg                                                                                            >  1:2300129/1‑99 (MQ=255)
              cgcCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGtt                                                                                       >  2:555825/1‑100 (MQ=255)
               gcCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTc                                                                                      <  2:3810850/100‑1 (MQ=255)
               gcCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTc                                                                                      <  2:259902/100‑1 (MQ=255)
                ccATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCa                                                                                     >  1:1859465/1‑100 (MQ=255)
                  aTGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcg                                                                                   <  1:1658372/100‑1 (MQ=255)
                    gACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgcc                                                                                 <  2:1373244/100‑1 (MQ=255)
                    gACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgcc                                                                                 <  1:2397075/100‑1 (MQ=255)
                     aCGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccg                                                                                >  1:1457729/1‑100 (MQ=255)
                       gCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCa                                                                              <  1:293554/100‑1 (MQ=255)
                         cAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATc                                                                            >  2:1139055/1‑100 (MQ=255)
                          aGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATcc                                                                           >  1:3314558/1‑100 (MQ=255)
                          aGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATcc                                                                           <  1:2386885/100‑1 (MQ=255)
                           gTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                                          >  2:2237433/1‑100 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCATGGGTAAGGGCTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        <  2:2677785/100‑1 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  1:305413/1‑100 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  2:1788780/1‑100 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  1:572999/1‑100 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        <  2:2990179/100‑1 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        <  1:1432255/100‑1 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  2:1325690/1‑100 (MQ=255)
                             agcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  1:2433959‑M1/71‑100 (MQ=255)
                             agcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  1:3155379‑M1/71‑100 (MQ=255)
                             agcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  1:2992181‑M1/71‑100 (MQ=255)
                              gcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                       >  1:1398578‑M1/70‑100 (MQ=255)
                               tttCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATGCGGCGTGAACGCCTTATCCGGcct                                                                      <  2:1531608/100‑3 (MQ=25)
                               tttCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                                      >  2:356114/1‑100 (MQ=255)
                                ttCGAGACGAATACGGAAGATAAGCGGCAGGGGTAAGTGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                                     <  2:2566915/100‑1 (MQ=255)
                                 tCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATc                                                                    >  1:1032656/1‑100 (MQ=255)
                                  gtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCg                                                                   >  1:133805‑M1/66‑100 (MQ=255)
                                    gatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgatgGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTg                                                                 >  2:1054178‑M1/64‑100 (MQ=255)
                                    agaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTg                                                                 >  1:1224843/1‑100 (MQ=255)
                                     gaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGc                                                                <  2:3190965/100‑1 (MQ=255)
                                     gaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGc                                                                <  2:3412516/100‑1 (MQ=255)
                                       cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCAATCGTGcac                                                              <  1:967957/100‑1 (MQ=255)
                                       cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCTGCATCCGGCAATCGGGcac                                                              >  1:2439792/1‑100 (MQ=255)
                                       cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGTATCCGGCAATCGTGcac                                                              <  1:784113/100‑1 (MQ=255)
                                       cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGcac                                                              <  1:147963/100‑1 (MQ=255)
                                       cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGcac                                                              >  1:328634/1‑100 (MQ=255)
                                       cGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGcac                                                              >  2:2835802/1‑100 (MQ=255)
                                            aCGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGc                                                         <  1:213511/100‑1 (MQ=255)
                                             cGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGcc                                                        <  2:1162996/100‑1 (MQ=255)
                                             cGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGcc                                                        <  1:2355167/100‑1 (MQ=255)
                                             cGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGcc                                                        >  1:2059104/1‑100 (MQ=255)
                                             cGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGcc                                                        >  2:2734185/1‑100 (MQ=255)
                                              ggAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCt                                                       <  2:1562889/100‑1 (MQ=255)
                                                 aGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGAt                                                    <  1:2522152/100‑1 (MQ=255)
                                                    tAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCg                                                 >  2:754292/1‑100 (MQ=255)
                                                         gTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCt                                            >  2:3709691/1‑100 (MQ=255)
                                                             ggggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcg                                        >  2:2728135/1‑100 (MQ=255)
                                                              gggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcgc                                       <  1:378305/100‑1 (MQ=255)
                                                                 tAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTc                                    <  2:240426/100‑1 (MQ=255)
                                                                 tAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTc                                    <  1:2729213/100‑1 (MQ=255)
                                                                  aaGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCt                                   <  1:3814618/100‑1 (MQ=255)
                                                                  aaGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCt                                   <  1:188528/100‑1 (MQ=255)
                                                                   aGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCtt                                  >  1:396480/1‑100 (MQ=255)
                                                                    gggTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCtt                                  >  2:401514/1‑99 (MQ=255)
                                                                    gggTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTa                                 >  1:3424983/1‑100 (MQ=255)
                                                                    gggTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTa                                 <  1:1074821/100‑1 (MQ=255)
                                                                    gggTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTa                                 >  2:3536371/1‑100 (MQ=255)
                                                                    gggTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTa                                 >  2:1108444/1‑100 (MQ=255)
                                                                       ttGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCa                              <  2:1653935/100‑1 (MQ=255)
                                                                         ggTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAgg                            <  1:2119303/100‑1 (MQ=255)
                                                                          gtgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGc                           <  1:3628099/100‑1 (MQ=21)
                                                                           tgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGcc                          >  1:3547593/1‑100 (MQ=255)
                                                                            gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCt                         >  1:3402292/1‑100 (MQ=255)
                                                                            gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCt                         <  1:1120342/100‑1 (MQ=255)
                                                                              tcgtcgCAGCAAGCCACCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTAc                       <  2:2229693/100‑1 (MQ=255)
                                                                               cgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcattgt                      <  1:1789830/100‑6 (MQ=18)
                                                                               cgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcattgt                      <  2:2758873/100‑6 (MQ=18)
                                                                                gtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGa                     >  2:1478078/1‑100 (MQ=255)
                                                                                 tcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGaa                    >  1:2249405/1‑100 (MQ=255)
                                                                                  cgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGaaa                   <  1:812071/100‑1 (MQ=255)
                                                                                   gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGaacg                  >  1:3200427/1‑98 (MQ=255)
                                                                                   gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                  >  2:2458232/1‑100 (MQ=255)
                                                                                   gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                  >  1:268682/1‑100 (MQ=255)
                                                                                   gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                  <  1:1981420/100‑1 (MQ=255)
                                                                                    cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                 >  2:2495303/1‑100 (MQ=255)
                                                                                    cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                 <  2:2353237/100‑1 (MQ=255)
                                                                                      gcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTa               >  1:1593416/1‑100 (MQ=255)
                                                                                      gcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTAGCAGGCCTACGAAAGCTa               >  1:2076459/1‑100 (MQ=255)
                                                                                        aaGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAat             <  2:842039/100‑1 (MQ=255)
                                                                                          gCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatca           >  1:1316558/1‑100 (MQ=255)
                                                                                            cATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatcatc         >  2:3642027/1‑100 (MQ=255)
                                                                                             aTCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAAtcatca        <  2:1226548/100‑1 (MQ=255)
                                                                                              tCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAc       >  2:954059/1‑100 (MQ=255)
                                                                                               ccAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcg      >  1:2351765/1‑100 (MQ=255)
                                                                                               ccAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcg      >  2:571141/1‑100 (MQ=255)
                                                                                                cAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc     >  2:2911586/1‑100 (MQ=255)
                                                                                                  tGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc   <  2:1853426‑M1/99‑1 (MQ=255)
                                                                                                   GCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCt  >  1:829780‑M1/1‑100 (MQ=255)
                                                                                                   GCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCt  >  2:3239120‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCT  >  NC_000913/3139526‑3139724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.