New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3555802NA (NA)11 (0.090) 10/162 NT NA noncoding (7/24 nt) REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3555812 NA (NA)noncoding (17/24 nt) REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 169 total aligned reads displayed.

AAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCG  >  NC_000913/3555713‑3555911
                                                                                                   |                                                                                                   
   cTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatc                                                                                                  <  2:698187‑M2/100‑4 (MQ=255)
   cTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGGGTAAGTTTAGCCGGATAACGCGCCAGat                                                                                                   <  2:2799262‑M2/99‑3 (MQ=255)
      ggCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccgg                                                                                               <  1:2336015‑M2/100‑7 (MQ=255)
         gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGCAGATGATGGGGTACGGCATGTAAGTTTAGACGGATAACGCGCCAGATCAGGCtt                                                                                            >  2:3207028/1‑100 (MQ=255)
         gTGGCCCAGCGCCAGGATGCGGTACAACACGCCCAGCAATGGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                                            <  1:3036177/100‑1 (MQ=255)
           ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                          <  2:3660678/100‑1 (MQ=255)
             cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAt                                                                                        >  1:2114733/1‑100 (MQ=255)
             cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGCGTACGGCGTGTAAGTTTAGCCGGTTAACGCGCCAGATCCGGCTTACa                                                                                         <  2:1637016/99‑1 (MQ=255)
                 tCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATctct                                                                                    >  2:2176862/1‑100 (MQ=255)
                  cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGTCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                                   <  2:3264799/100‑1 (MQ=255)
                  cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                                   <  2:1875738/100‑1 (MQ=255)
                  cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                                   <  2:1277067/100‑1 (MQ=255)
                  cGCCAGGATGCGGTACAACACGCCCAGCAATGGCGGAAGGTGATGGGGTACGGCGTCGAGGTGTAGCCGTATAACGCGCCAGAGCCGACGTACAtc                                                                                       >  2:2810859/1‑96 (MQ=255)
                   gCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGc                                                                                  >  1:1885428/1‑100 (MQ=255)
                    ccAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGca                                                                                 >  1:1183042/1‑100 (MQ=255)
                     cAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcat                                                                                <  1:2630688/100‑1 (MQ=255)
                     cAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcat                                                                                <  1:2204945/100‑1 (MQ=255)
                      aGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatc                                                                               <  1:307992/100‑1 (MQ=255)
                        gATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatcat                                                                             <  2:2531487/100‑1 (MQ=255)
                        gATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatcat                                                                             <  1:2442723/100‑1 (MQ=255)
                         aTGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCAtt                                                                            >  1:2937737/1‑100 (MQ=255)
                          tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                           <  1:408369/100‑1 (MQ=255)
                          tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                           <  2:1662418/100‑1 (MQ=255)
                          tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                           <  2:974392/100‑1 (MQ=255)
                            cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCCTTcca                                                                         >  2:70163/1‑98 (MQ=255)
                             ggTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCNCCAGATCCGGCTTACATCTCTGCATCATTCAAt                                                                        <  1:1163889/100‑1 (MQ=255)
                             ggTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAAt                                                                        <  1:1691367/100‑1 (MQ=255)
                              gTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGTATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAAt                                                                        <  2:3642654/99‑1 (MQ=255)
                               tACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGc                                                                      <  2:3101653/100‑1 (MQ=255)
                                agaacaTGCCCCGCAATTGCTGAAGATGCTGCGGTACGGCGTGGCAGTTTACCCGGAGAACGCGCCAGATCCGCGTTGCCTCCCTGCTTCCTTGCATGCt                                                                     >  2:1660823/3‑100 (MQ=255)
                                 caacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCCTTCAATGCTc                                                                    >  2:336993/1‑100 (MQ=255)
                                 caacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTc                                                                    >  2:557202/1‑100 (MQ=255)
                                  aacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCa                                                                   <  1:3476894/100‑1 (MQ=255)
                                  aacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCa                                                                   >  2:2359341/1‑100 (MQ=255)
                                   acacGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCa                                                                   <  2:3362281/99‑1 (MQ=255)
                                    cacacccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCAcc                                                                 <  2:2624781/96‑1 (MQ=255)
                                        cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                             <  2:757069/100‑1 (MQ=255)
                                        cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                             <  1:3686150/100‑1 (MQ=255)
                                        cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                             <  1:680613/100‑1 (MQ=255)
                                           aGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATCCAATGCTCACCCGCGTTa                                                          >  1:2483793/1‑100 (MQ=255)
                                            gCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGTCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTAc                                                         <  2:2343963/100‑1 (MQ=255)
                                            gCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTAc                                                         >  2:955262/1‑100 (MQ=255)
                                             cAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTAc                                                         >  1:2389009/1‑99 (MQ=255)
                                              aaTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACg                                                        <  1:600534/99‑1 (MQ=255)
                                              aaTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGc                                                       <  1:3381334/100‑1 (MQ=255)
                                                ttGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCa                                                     <  1:2185101/100‑1 (MQ=255)
                                                ttGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCa                                                     <  1:921538/100‑1 (MQ=255)
                                                 tGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCAt                                                    <  1:257097/100‑1 (MQ=255)
                                                  gCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATc                                                   <  1:2786603/100‑1 (MQ=255)
                                                    tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccaccatcttcagcaatttctgggc                                                  <  2:495407‑M2/99‑52 (MQ=255)
                                                      aaGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGtc                                               <  2:3595864/100‑2 (MQ=255)
                                                        gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                             <  1:396404/100‑1 (MQ=255)
                                                        gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                             <  2:2061786/100‑1 (MQ=255)
                                                        gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                             <  2:1214146/100‑1 (MQ=255)
                                                         atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCt                                            <  1:1561529/100‑1 (MQ=255)
                                                         atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCt                                            <  2:645015/100‑1 (MQ=255)
                                                          tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgt                                           <  1:1762754‑M2/100‑59 (MQ=255)
                                                          tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                                           >  1:857500/1‑100 (MQ=255)
                                                           gatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTAt                                          <  1:943196/100‑1 (MQ=255)
                                                            atgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATc                                         >  1:2779876/1‑100 (MQ=255)
                                                            atgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATc                                         <  1:2047206/100‑1 (MQ=255)
                                                               gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaaa                                      <  2:3495823/100‑1 (MQ=255)
                                                                ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGCTCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                     >  2:2288748/1‑100 (MQ=255)
                                                                ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                     <  1:706010/100‑1 (MQ=255)
                                                                ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                     <  1:2894556/100‑1 (MQ=255)
                                                                 gTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACt                                    <  1:3419085/100‑1 (MQ=255)
                                                                   aCGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCTATCTGTTTCTATCAAACtca                                  >  1:106548/1‑98 (MQ=255)
                                                                     ggCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc                                <  2:1820460/100‑1 (MQ=255)
                                                                      gCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc                                <  2:2455647/99‑1 (MQ=255)
                                                                       cGTGTAAGTTTAGCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggc                              <  2:1961336‑M2/100‑72 (MQ=255)
                                                                       cGTGTAAGGTTAGTCGGATAACCCGCCCGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAcc                               <  2:3803510/99‑1 (MQ=255)
                                                                        gtgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCg                              <  1:1973631/99‑1 (MQ=255)
                                                                        gtgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGc                             <  1:1526880/100‑1 (MQ=255)
                                                                          gtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCGTCTGTTTCTATCAAACTAAACCGCAc                           >  1:3362511/1‑100 (MQ=255)
                                                                            aaGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCg                         <  2:3196762/100‑1 (MQ=255)
                                                                             aGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCAcc                          >  2:2737135/1‑98 (MQ=255)
                                                                             aGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCAcc                          <  1:1931919/98‑1 (MQ=255)
                                                                             aGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCgg                        <  2:909459/100‑1 (MQ=255)
                                                                               tttAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa                      >  1:1274719/1‑100 (MQ=255)
                                                                                ttAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCaa                     <  2:1865611/100‑1 (MQ=255)
                                                                                 tAGCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccac                    <  1:1817836‑M2/100‑82 (MQ=255)
                                                                                 tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCaa                     >  2:2149486/1‑99 (MQ=255)
                                                                                 tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg                    <  1:3021305/100‑1 (MQ=255)
                                                                                 tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg                    <  2:303243/100‑1 (MQ=255)
                                                                                   gCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaa                  >  2:897925/1‑100 (MQ=255)
                                                                                   gCCGGATAACGCGCCAGATACGGCTTACATCTCTGCATCATGCAATGCTCACCCGCGTTAAGCAATCTTTTTCTATCAAAATAAACCGCACCGGCAAg                    >  2:2914188/1‑98 (MQ=255)
                                                                                    ccGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaaa                 <  2:1246901/100‑1 (MQ=255)
                                                                                     cGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAAc                >  2:1745701/1‑100 (MQ=255)
                                                                                     cGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAAc                <  1:1070878/100‑1 (MQ=255)
                                                                                      ggATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCCATCAAACTAAACCGCACCGGCAAGAAAc                >  1:538753/1‑99 (MQ=255)
                                                                                       gATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGc              <  1:3329140/100‑1 (MQ=255)
                                                                                         tAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTc            >  1:2383529/1‑100 (MQ=255)
                                                                                           aCGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccgagtttc          >  2:1762744‑M2/1‑9 (MQ=255)
                                                                                            cgcgCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccac         >  1:1365756/1‑100 (MQ=255)
                                                                                            cgcgCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccac         >  2:3018737/1‑100 (MQ=255)
                                                                                             gcgcCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccacc        <  2:1200818/100‑1 (MQ=255)
                                                                                                ccAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCaccacc     <  2:1802814/100‑1 (MQ=255)
                                                                                                 cAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcg    >  2:1446122/1‑100 (MQ=255)
                                                                                                  aGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcgc   <  2:139633/100‑1 (MQ=255)
                                                                                                   gATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcgcg  >  2:2563590/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCG  >  NC_000913/3555713‑3555911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.