New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3622540 =NA (NA)29 (0.230) 7/168 NT 100% coding (3349/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3622556 = 0 (0.000)coding (3365/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTG  >  NC_000913/3622457‑3622634
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gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                >  1:2985292‑M2/100‑100 (MQ=255)
gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                >  2:361079‑M2/100‑100 (MQ=255)
gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                >  1:1816857‑M2/100‑100 (MQ=255)
gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                >  2:3725263‑M2/100‑100 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                               <  1:184907‑M2/2‑1 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                               >  2:440031‑M2/99‑100 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                              <  2:3267497‑M2/3‑1 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                             >  1:1087257‑M2/97‑100 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                             <  1:3024598‑M2/4‑1 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                             <  1:3781989‑M2/4‑1 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgcgccacggtcaggccgcacgatgccagccagcggcgn                                                                             <  2:1370597‑M2/4‑2 (MQ=255)
    cttccgatctggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                            <  1:1168496‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                            <  1:1358542‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                            <  2:3461494‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                            <  1:3103691‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgcccgcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                            <  2:2690352‑M2/5‑1 (MQ=255)
              ggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggcagatcggaag                                                                  >  2:1168487‑M2/86‑90 (MQ=255)
                                                catctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTacac                                >  1:1662238‑M2/52‑100 (MQ=255)
                                                               cttccgatctgtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAAt                 <  2:2592741‑M2/64‑1 (MQ=255)
                                                                     caccgtcaggccgcacgatgccagccagcgGCGGCTTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCt           >  1:2839510‑M2/31‑100 (MQ=255)
                                                                       cggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGt         >  1:120619‑M2/29‑100 (MQ=255)
                                                                        ggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTa        >  1:287400‑M2/28‑100 (MQ=255)
                                                                        cgtcaggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTa        >  1:3637865‑M2/28‑100 (MQ=255)
                                                                         gtcaggccgcacggtgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGgcgcgaaaaatagatcggaag       >  1:2592760‑M2/27‑90 (MQ=255)
                                                                         gtcaggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTAc       >  1:2806075‑M2/27‑100 (MQ=255)
                                                                         gtcaggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTAc       >  2:496186‑M2/27‑100 (MQ=255)
                                                                         acggtcaggccgcacggtgccagccaGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAc       >  2:1913321‑M2/27‑100 (MQ=255)
                                                                          cggtcaggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATTCACCTGTAcc      >  2:2506155‑M2/26‑100 (MQ=255)
                                                                           cgtcaggccgcacgatgccagccaGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa     >  1:1811548‑M2/25‑100 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa     >  1:1780696‑M2/25‑100 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa     >  2:601432‑M2/25‑100 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa     >  2:966521‑M2/25‑100 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa     >  2:2657647‑M2/25‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCTGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGCCGCGAAAAATCCACCTGTAcc      >  2:3754277‑M2/23‑97 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt   >  2:2594927‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt   >  1:1644382‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt   >  1:1039739‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt   >  1:592657‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt   >  2:2630361‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt   >  2:121739‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt   >  1:3367498‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt   >  1:1282852‑M2/23‑100 (MQ=255)
                                                                              gccgcacgatgccagtcagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg  >  1:1438021‑M2/22‑100 (MQ=255)
                                                                              gccgcacgatgccagtcagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg  >  1:1436691‑M2/22‑100 (MQ=255)
                                                                              gccgcacgatgccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg  >  1:3707670‑M2/22‑100 (MQ=255)
                                                                              caggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGCAAAACCAGAGGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt   >  2:522610‑M2/22‑99 (MQ=255)
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TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTG  >  NC_000913/3622457‑3622634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.