New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4209894 =NA (NA)8 (0.070) 6/156 NT 100% intergenic (+45/‑149) gltV/rrlE tRNA‑Glu/23S ribosomal RNA of rrnE operon
?NC_000913 4209912 = 0 (0.000)intergenic (+63/‑131) gltV/rrlE tRNA‑Glu/23S ribosomal RNA of rrnE operon

GGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATG  >  NC_000913/4209813‑4210011
                                                                                                   |                                                                                                   
gagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt                                                                                                     <  1:1063823‑M2/1‑1 (MQ=255)
gagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt                                                                                                     >  2:2608551‑M2/100‑100 (MQ=255)
gagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt                                                                                                     <  1:1305878‑M2/1‑1 (MQ=255)
gagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt                                                                                                     >  1:1710128‑M2/100‑100 (MQ=255)
 agagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt                                                                                                    >  2:3449468‑M2/99‑100 (MQ=255)
 agagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt                                                                                                    >  1:1601980‑M2/99‑100 (MQ=255)
  gagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt                                                                                                     <  2:2270704‑M2/1‑1 (MQ=255)
   agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg                                                                                                  <  2:1396241‑M2/4‑1 (MQ=255)
   agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg                                                                                                  <  2:2250446‑M2/4‑1 (MQ=255)
   agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg                                                                                                  <  1:2125003‑M2/4‑1 (MQ=255)
   agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg                                                                                                  <  1:1962186‑M2/4‑1 (MQ=255)
   agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg                                                                                                  >  1:1942728‑M2/97‑100 (MQ=255)
   agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg                                                                                                  >  2:2734292‑M2/97‑100 (MQ=255)
   agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg                                                                                                  <  2:3160562‑M2/4‑1 (MQ=255)
   agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg                                                                                                  <  2:470197‑M2/4‑1 (MQ=255)
    gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga                                                                                                 <  2:54842‑M2/5‑1 (MQ=255)
    gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga                                                                                                 <  2:1036892‑M2/5‑1 (MQ=255)
    gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga                                                                                                 <  2:2258400‑M2/5‑1 (MQ=255)
    gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga                                                                                                 <  1:1339919‑M2/5‑1 (MQ=255)
     actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag                                                                                                <  2:1879153‑M2/6‑1 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               >  2:3307017‑M2/94‑100 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               <  1:1416195‑M2/7‑1 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               <  2:3065393‑M2/7‑1 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               <  1:3560979‑M2/7‑1 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               <  1:3561615‑M2/7‑1 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               >  2:1564686‑M2/94‑100 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               <  1:989042‑M2/7‑1 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               >  1:1876043‑M2/94‑100 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga                                                                                               >  2:1383896‑M2/94‑100 (MQ=255)
      ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtCTTgaga                                                                                               >  2:1736908‑M2/94‑100 (MQ=255)
       tcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGat                                                                                              <  1:1165511‑M2/8‑1 (MQ=255)
       tcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGat                                                                                              <  2:1481404‑M2/8‑1 (MQ=255)
        cacgaacaactttcgttgttcagtgtttcagttctcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgaatTTTGAGata                                                                                             >  2:2505604‑M2/92‑100 (MQ=255)
        cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata                                                                                             >  2:937442‑M2/92‑100 (MQ=255)
        cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata                                                                                             <  1:3558361‑M2/9‑1 (MQ=255)
        cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata                                                                                             >  2:1439675‑M2/92‑100 (MQ=255)
        cacgaacaactttcgttgttcagcgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata                                                                                             >  2:648205‑M2/92‑100 (MQ=255)
         acgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGatat                                                                                            >  1:1407900‑M2/91‑100 (MQ=255)
         acgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGatat                                                                                            >  1:2421227‑M2/91‑100 (MQ=255)
         acgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGatat                                                                                            >  1:1845709‑M2/91‑100 (MQ=255)
         acgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata                                                                                             <  2:1868886‑M2/9‑1 (MQ=255)
         acaaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGatat                                                                                            <  2:249637‑M2/10‑1 (MQ=255)
          cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt                                                                                           <  1:1036303‑M2/11‑1 (MQ=255)
          cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt                                                                                           >  1:3748105‑M2/90‑100 (MQ=255)
          cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt                                                                                           >  1:350232‑M2/90‑100 (MQ=255)
          cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt                                                                                           <  1:1841601‑M2/11‑1 (MQ=255)
           gaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgattTTTGagatatca                                                                                          <  1:2590706‑M2/12‑3 (MQ=255)
                                              cttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGATATATACAAATCTGGATCAAGCTGAAAATTGa                                                        >  2:2550811‑M2/54‑99 (MQ=255)
                                                         tttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGaacaa                                            >  1:770990‑M2/43‑100 (MQ=255)
                                                            ttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGa                                         >  1:1073395‑M2/40‑100 (MQ=255)
                                                               aagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAg                                      >  1:828562‑M2/37‑100 (MQ=255)
                                                                agagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAgt                                     >  1:1527347‑M2/36‑100 (MQ=255)
                                                                   gcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgttgt                                  >  1:500674‑M2/33‑100 (MQ=255)
                                                                   gcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgttgt                                  >  1:1264313‑M2/33‑100 (MQ=255)
                                                                          tctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAg                           >  1:2773941‑M2/26‑100 (MQ=255)
                                                                                                   TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg  <  1:1317250‑M2/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATG  >  NC_000913/4209813‑4210011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.