Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,391,414 C→G 20.2% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,391,4140CG20.2% 317.4 / 75.6 139R31P (CGA→CCA) nuoNNADH:ubiquinone oxidoreductase, membrane subunit N
Reads supporting (aligned to +/- strand):  ref base C (42/68);  new base G (16/12);  total (59/80)
Fisher's exact test for biased strand distribution p-value = 8.71e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.48e-01

Only 100 of 141 total aligned reads displayed.

AACGTCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTT  >  NC_000913/2391317‑2391513
                                                                                                 |                                                                                                   
 aCGTCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGcc                                                                                                  <  1:1728921/100‑1 (MQ=255)
  cGTCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCa                                                                                                 >  2:3032773/1‑100 (MQ=255)
  cGTCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCa                                                                                                 >  1:1221747/1‑100 (MQ=255)
    tCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGCTAAGCCCAATAACCGAGAGCGTAGCGTGGAGGAAATGATTGCGTCGc                                                                                                   >  2:3780673/1‑96 (MQ=255)
    tCCAGAGCGACCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATTATTGCGTCGCCACg                                                                                               <  2:688594/100‑1 (MQ=255)
        tAGCGCCCACCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAAt                                                                                           >  1:156785/1‑100 (MQ=255)
         aGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtc                                                                                          <  1:1557807/100‑2 (MQ=255)
         aGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATg                                                                                          >  1:2130898/1‑100 (MQ=255)
         aGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATg                                                                                          <  1:863641/100‑1 (MQ=255)
         aGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAAGAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtc                                                                                          <  2:358603/100‑2 (MQ=255)
          gcgcCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATgg                                                                                         <  1:239324/100‑1 (MQ=255)
          gcgcCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATgg                                                                                         <  2:1407901/100‑1 (MQ=255)
           cgcccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATgg                                                                                         <  2:1467833/99‑1 (MQ=255)
            gcccgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGgag                                                                                       <  2:2782682/100‑1 (MQ=255)
               cgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcatttcc                                                                                    <  1:1174936/100‑8 (MQ=255)
               cgccTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcatttcc                                                                                    <  1:2468114/100‑8 (MQ=255)
               cgccCGGCCAACAAACCAGAGGGAAAACAGCGCCGCGTTAAGACCAGTAACCGTAACCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATgg                                                                                         <  2:2080768/95‑1 (MQ=255)
                  cTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGCGAGCGAAGCGCTGAGGAAATGCATGCGTCGCCACGCAATGGAGAGCATc                                                                                 >  2:798793/1‑100 (MQ=255)
                  cTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTGGCGACGCAAtcatttcctta                                                                                 <  1:2589312/100‑11 (MQ=38)
                  cTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATc                                                                                 <  1:1064825/100‑1 (MQ=255)
                  cTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATc                                                                                 <  1:293031/100‑1 (MQ=255)
                  cTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATc                                                                                 <  2:536073/100‑1 (MQ=255)
                   tGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATca                                                                                <  2:2104151/100‑1 (MQ=255)
                    ggCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcac                                                                               >  1:3155635/1‑100 (MQ=255)
                    ggCCAACAAACCAGAGCGAAACCAGCGACGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATc                                                                                 <  2:3401688/98‑1 (MQ=255)
                     gCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcaca                                                                              <  1:2093368/100‑1 (MQ=255)
                     gCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcaca                                                                              <  2:3820070/100‑1 (MQ=255)
                     gCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcaca                                                                              >  2:1286869/1‑100 (MQ=255)
                      cgaacaaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACaa                                                                             <  2:1317434/98‑1 (MQ=255)
                        aacaaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAacc                                                                           <  2:88225/100‑1 (MQ=255)
                         acaaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAacca                                                                          <  2:2271860/100‑1 (MQ=255)
                          caaACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGTGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAaccac                                                                         >  1:994295/1‑100 (MQ=255)
                           aaaCCAGGGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGCGAGCGTAGCGTTCAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAaccacc                                                                        <  2:2633570/100‑1 (MQ=255)
                             aCCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATcaagatcggaag                                                                      >  2:1205697/1‑90 (MQ=255)
                             aCCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAaccaccac                                                                      <  2:3567519/100‑1 (MQ=255)
                             aCCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAaccaccac                                                                      >  1:57681/1‑100 (MQ=255)
                              ccAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAaccacctcc                                                                     <  2:1194100/100‑1 (MQ=255)
                              ccAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAaccaccacc                                                                     <  1:1478577/100‑1 (MQ=255)
                               cAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCg                                                                    <  1:3265977/100‑1 (MQ=255)
                                 nagCGAAACCAGCGCCGCGTTCAGCCCAATAACCGAGAGCGAAGCGACGAGGAAATGATGGAGTCGCCACGCAATGCAGAGCATCACAaccaccagc                                                                     >  2:2291726/2‑95 (MQ=255)
                                 gagCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTc                                                                  <  2:265546/100‑1 (MQ=255)
                                  agCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCa                                                                 <  1:3032797/100‑1 (MQ=255)
                                   gCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCaa                                                                >  2:659561/1‑100 (MQ=255)
                                   gCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCaa                                                                >  1:2308386/1‑100 (MQ=255)
                                   gCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTCGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCaa                                                                >  2:433330/1‑100 (MQ=255)
                                    cGAAACCAGCGCCGCGTTAAGCCCAATATCCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAg                                                               <  1:488082/100‑1 (MQ=255)
                                     gAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGc                                                              <  1:266614/100‑1 (MQ=255)
                                      aaaCCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGcc                                                             <  2:279404/100‑1 (MQ=255)
                                       aaCCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCcg                                                            >  1:2489275/1‑100 (MQ=255)
                                         ccAGCGCCGCGTTAAACGCAATTACCGAGAGCGTAGCGTTGAGGAAACGATTGCGTCGCCACGCAATGGAGAGCATCACACCCACCACCGTCAAGCtgac                                                          <  2:3082785/100‑1 (MQ=255)
                                          cAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCcgac                                                          <  1:1882814/99‑1 (MQ=255)
                                              gccgcGTTAAGCCCAATAACCGAGAGCGTAGCGTTGGGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCa                                                     >  1:2697520/1‑100 (MQ=255)
                                                cgcgTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGc                                                   <  1:436809/100‑1 (MQ=255)
                                                cgcgTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGc                                                   <  1:3350181/100‑1 (MQ=255)
                                                   gTTAAGCCCAATAACCGAGACCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCaa                                                 >  2:2337847/1‑99 (MQ=255)
                                                   gTTAAGCACAATAACCGAGAGCGTAGCGTAGAGTAAATGATGCCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGAt                                                       <  2:1102384/93‑1 (MQ=255)
                                                     tAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACgg                                              <  1:2148517/100‑1 (MQ=255)
                                                       aGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTa                                            <  1:3185320/100‑1 (MQ=255)
                                                       aGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTa                                            <  1:2136819/100‑1 (MQ=255)
                                                        gCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGCGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAg                                           >  2:2437765/1‑100 (MQ=255)
                                                        gCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGACTGCGTCGCCACGCAATGGAGAGCATCAAAACCACCACCGTCAAGCCGACGATCAGCAACGGTa                                            >  2:1646828/1‑99 (MQ=255)
                                                             aTAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTg                                      <  2:1805923/100‑1 (MQ=255)
                                                              tAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGc                                     <  2:1821492/100‑1 (MQ=255)
                                                                 ccGAGAGCGTAGCGGTGAGGAAATGATTGCGTCGCCACGCAATGGAGCGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGAt                                  >  2:1951092/1‑100 (MQ=255)
                                                                   gagaGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCa                                >  2:1374591/1‑100 (MQ=255)
                                                                    agagCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAg                               >  1:1809582/1‑100 (MQ=255)
                                                                     gagCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAgg                              <  2:1392499/100‑1 (MQ=255)
                                                                     gagCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATAGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAgg                              <  1:1938445/100‑1 (MQ=255)
                                                                          tagcgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTtg                         >  2:3344825/1‑100 (MQ=255)
                                                                           agcgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTtgt                        <  2:924332/100‑1 (MQ=255)
                                                                            gcgtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTtgtg                       <  2:1053186/100‑1 (MQ=255)
                                                                              gtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGa                     >  2:2005479/1‑100 (MQ=255)
                                                                              gtTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGa                     <  1:1028775/100‑1 (MQ=255)
                                                                               ttGAGGAAATGATTGCGTCGCCACGCAATGGAGCGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAg                    <  2:2917184/100‑1 (MQ=255)
                                                                               ttGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAg                    <  2:57681/100‑1 (MQ=255)
                                                                                 gAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGtt                  >  2:901179/1‑100 (MQ=255)
                                                                                 atgctctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGtt                  >  1:540618/10‑100 (MQ=38)
                                                                                  tgctctccaTTGCGTGGCGACGCAATGGAGAGCATCACCACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTa                 >  2:1519197/9‑100 (MQ=38)
                                                                                  aGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTa                 >  1:537178/1‑100 (MQ=255)
                                                                                   ggAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTAt                <  1:1929552/100‑1 (MQ=255)
                                                                                   ggAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTAt                >  1:1767866/1‑100 (MQ=255)
                                                                                    ctctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTAtt               >  1:583760/7‑100 (MQ=255)
                                                                                     tctccaTTGCGTGGCGACGCAATGGAGAGCATCACACCCACCACCGTCCAGCCGACGATCGGCACCGGTAGCAGCGCGATCAGGCTTTGTGGAGCTa                 >  2:898100/6‑97 (MQ=255)
                                                                                     tctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTAtt               >  1:3284828/6‑99 (MQ=255)
                                                                                     tctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTg              >  1:388815/6‑100 (MQ=255)
                                                                                     tctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTg              >  2:2512623/6‑100 (MQ=255)
                                                                                     aaaTGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTg              <  2:3279347/100‑1 (MQ=255)
                                                                                      ctccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGt             >  2:2239970/5‑100 (MQ=255)
                                                                                      aaTGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGt             <  1:875391/100‑1 (MQ=255)
                                                                                       tccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTc            >  1:3058720/4‑100 (MQ=255)
                                                                                       tccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTc            >  1:2076047/4‑100 (MQ=255)
                                                                                        tGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCa           <  2:410333/100‑1 (MQ=255)
                                                                                        ccaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCa           >  2:1504545/3‑100 (MQ=255)
                                                                                         caTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCAt          >  2:1438867/2‑100 (MQ=255)
                                                                                         aaTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGGAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCa           >  2:1336157/2‑99 (MQ=255)
                                                                                          aTTGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATAAGCAACGGTAGCAGTGCGATCAGGCTTTGTGGAGTTATTGTCATg         >  2:1687685/1‑100 (MQ=255)
                                                                                           ttGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATgg        <  1:1286878/100‑1 (MQ=255)
                                                                                            tGCGTGGCGACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGc       <  2:583754/100‑1 (MQ=255)
                                                                                                 cGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTCCGATCAGGTCTTGCGGAGTTCTTGTCATGGCGAttt  >  2:1510793/1‑100 (MQ=255)
                                                                                                 cGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAAAGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGAtt   >  1:1708497/1‑99 (MQ=255)
                                                                                                 |                                                                                                   
AACGTCCATAGCGCCCGCCTGGCCAACAAACCAGAGCGAAACCAGCGCCGCGTTAAGCCCAATAACCGAGAGCGTAGCGTTGAGGAAATGATTGCGTCGCCACGCAATGGAGAGCATCACAACCACCACCGTCAAGCCGACGATCAGCAACGGTAGCAGTGCGATCAGGTTTTGTGGAGTTATTGTCATGGCGATTT  >  NC_000913/2391317‑2391513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: