Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,449,615 C→G 16.6% G145G (GGG→GGC) ‡ yfcO ← DUF2544 family putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,449,6150CG16.6% 400.8 / 67.4 152G145G (GGG→GGCyfcODUF2544 family putative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base C (64/61);  new base G (10/15);  total (76/76)
Fisher's exact test for biased strand distribution p-value = 3.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.93e-01

Only 100 of 159 total aligned reads displayed.

CAGGGTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAACC  >  NC_000913/2449516‑2449714
                                                                                                    |                                                                                                   
cAGGGTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGc                                                                                                     >  1:2765928/1‑100 (MQ=255)
 aGGGTGAGCAGTTTTGGCTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGc                                                                                                     <  2:54823/99‑1 (MQ=255)
  gggTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGccc                                                                                                   <  1:41245/100‑1 (MQ=255)
     tGAGCAGTTGTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTg                                                                                                <  2:2024632/100‑1 (MQ=255)
      gAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTg                                                                                                >  2:1091212/1‑99 (MQ=255)
      gAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGa                                                                                               <  2:804127/100‑1 (MQ=255)
        gCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATa                                                                                             >  2:3734726/1‑100 (MQ=255)
         cAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATAc                                                                                            <  2:910376/100‑1 (MQ=255)
         cAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATAc                                                                                            <  1:486091/100‑1 (MQ=255)
          aGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACg                                                                                           <  2:2403600/100‑1 (MQ=255)
           gTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGt                                                                                          >  1:1415608/1‑100 (MQ=255)
            ttttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTc                                                                                         <  2:158238/100‑1 (MQ=255)
              ttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCAc                                                                                       <  2:2638077/100‑1 (MQ=38)
              ttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCAc                                                                                       <  1:987720/100‑1 (MQ=255)
              ttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCAc                                                                                       <  2:35488/100‑1 (MQ=255)
                 aCTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgac                                                                                    <  1:31609/100‑3 (MQ=37)
                  cTTACTGACGTTATTCTCATTCCATGAAACGTCATATGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGACCTGATagaaacgaca                                                                                    <  2:1090918/100‑10 (MQ=255)
                  cTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgaca                                                                                   <  2:698356/100‑4 (MQ=37)
                  cTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGccc                                                                                   >  1:677899/1‑100 (MQ=255)
                  cTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGccc                                                                                   >  2:3435925/1‑100 (MQ=255)
                   ttACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacac                                                                                  <  1:1800585/100‑5 (MQ=25)
                   ttACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacac                                                                                  <  1:2313581/100‑5 (MQ=25)
                   ttACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacac                                                                                  <  1:718648/100‑5 (MQ=37)
                   ttACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacac                                                                                  <  1:28356/100‑5 (MQ=25)
                    tACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacacg                                                                                 <  2:541317/100‑6 (MQ=25)
                     aCTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacacga                                                                                <  2:474715/100‑7 (MQ=25)
                      cTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTg                                                                               <  2:293006/100‑1 (MQ=255)
                      cTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTg                                                                               >  1:3188898/1‑100 (MQ=255)
                       tGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTgg                                                                              >  2:3666283/1‑100 (MQ=255)
                        gACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGga                                                                             >  1:340292/1‑100 (MQ=255)
                          gaTAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGgaga                                                                           <  1:634400/99‑1 (MQ=255)
                          cATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGgaga                                                                           >  1:3784776/1‑100 (MQ=255)
                           aTAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGagag                                                                          >  2:3122217/1‑100 (MQ=255)
                            tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAgg                                                                         >  2:1514082/1‑100 (MQ=255)
                            tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAgg                                                                         >  1:2469496/1‑100 (MQ=255)
                            tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAgg                                                                         >  1:2436932/1‑100 (MQ=255)
                            tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAgg                                                                         >  1:2315677/1‑100 (MQ=255)
                             aaTTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGc                                                                        >  2:1366398/1‑100 (MQ=255)
                               ttCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCtt                                                                      >  1:1650646/1‑100 (MQ=255)
                               ttCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCtt                                                                      >  2:2950104/1‑100 (MQ=255)
                                  tcATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCag                                                                   >  2:1783965/1‑100 (MQ=255)
                                  tcATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCag                                                                   <  1:924278/100‑1 (MQ=255)
                                    aTTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCagag                                                                 >  1:1929844/1‑100 (MQ=255)
                                    aTTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCagag                                                                 <  1:1946101/100‑1 (MQ=255)
                                       ccATGAAACGTCATAAGGTTGAACAGAAACGGCTGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGtca                                                              >  1:3626950/1‑100 (MQ=255)
                                         aTGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATCCGTCACGCCCCCTGGAGAGGCTTCAGAGtcatt                                                            >  1:3317220/1‑100 (MQ=255)
                                          tGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGtcattc                                                           <  1:470616/100‑1 (MQ=255)
                                          tGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGtcattc                                                           <  1:1487767/100‑1 (MQ=255)
                                            ataCGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGtcattcat                                                         >  1:2587260/3‑100 (MQ=255)
                                             aaCGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCata                                                        <  2:1238033/100‑1 (MQ=255)
                                             aaCGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCata                                                        <  2:733315/100‑1 (MQ=255)
                                               cGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCataat                                                      <  1:519673/100‑1 (MQ=255)
                                               cGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCataat                                                      <  2:3351174/100‑1 (MQ=255)
                                                gTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCataata                                                     <  1:3114777/100‑1 (MQ=255)
                                                gTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCataata                                                     <  1:1560737/100‑1 (MQ=255)
                                                    tAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATaacca                                                 >  1:3605688/1‑100 (MQ=255)
                                                    tAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGACCCTGATACGTCACGCGCCCTGGAGAGGCTTCAGAGTCATTCATAATaacca                                                 >  2:1249723/1‑100 (MQ=255)
                                                        gTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAaccaacca                                             <  1:2778430/100‑1 (MQ=255)
                                                        gTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAaccaacca                                             >  2:2111128/1‑100 (MQ=255)
                                                          tGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATg                                           <  1:3421364/100‑1 (MQ=255)
                                                           gAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGACCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATg                                           >  2:586378/1‑99 (MQ=255)
                                                             aCAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGAc                                        >  1:1209849/1‑100 (MQ=255)
                                                             aCAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGAc                                        <  1:2802199/100‑1 (MQ=255)
                                                             aCAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGAc                                        <  2:582978/100‑1 (MQ=255)
                                                              cAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACa                                       >  1:2103836/1‑100 (MQ=255)
                                                                gAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCAAGCCCCCAGGAGAGGCTTCAGAGTAATTCATAATAACCAACCATGGACAAg                                     >  2:3236271/1‑100 (MQ=255)
                                                                gAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGGCACGCCGCCGGGAGAGGCTTCAGAGGCATTCATAATAACCAACCATGGACAAg                                     >  2:1268863/1‑100 (MQ=255)
                                                                     ggATGGACAAATCGGGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAg                                <  1:1664057/100‑1 (MQ=255)
                                                                       aTGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTa                              <  1:1811388/100‑1 (MQ=255)
                                                                        tGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTaa                             >  2:3079617/1‑100 (MQ=255)
                                                                         ggACAAATTGTGTCTTGACTATCAGGCCCCTGATACGTGACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAGGAAAAg                                <  2:1563629/96‑1 (MQ=255)
                                                                          gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCGCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAgn                           <  2:2436916/100‑2 (MQ=255)
                                                                          gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGa                           >  1:2933524/1‑100 (MQ=255)
                                                                          gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGa                           >  2:1860767/1‑100 (MQ=255)
                                                                          gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGa                           <  1:949883/100‑1 (MQ=255)
                                                                             aaaTCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTc                        >  2:338523/1‑100 (MQ=255)
                                                                             aaaTCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTc                        >  1:2955491/1‑100 (MQ=255)
                                                                                 gggggcgtgACGTATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtc                    >  2:2768075/6‑100 (MQ=25)
                                                                                 cgtgtcgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtc                    <  1:1408325/100‑1 (MQ=255)
                                                                                  gtgtcgtgCCTATCAGGCTCCTGATACGTCACGCCCCCTGGAGAGACTTCAAAGTCATTATTAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtc                    <  2:2829178/99‑1 (MQ=255)
                                                                                  ggggcgtgACGTATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtct                   >  2:779640/5‑100 (MQ=37)
                                                                                    gtcgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATctct                 >  1:1709589/1‑100 (MQ=255)
                                                                                     tcgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTg                <  2:1757859/100‑1 (MQ=255)
                                                                                     tcgtgACTATCACGCCCCTCATACGTCACGCCCCCTGGAGACGCTTCATAGTCATTCATAATAACCAACCATTGACAAGAAAAGTAAGATTCAATctct                 <  2:1482342/99‑1 (MQ=255)
                                                                                     gcgtgACGTATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTg                >  2:2551572/2‑100 (MQ=37)
                                                                                      cgtgACGTATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               >  1:1027190/1‑100 (MQ=38)
                                                                                      cgtgACGTATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAAACAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               >  1:1261535/1‑100 (MQ=37)
                                                                                      cgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               <  2:34846/100‑1 (MQ=255)
                                                                                      cgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               >  1:1393483/1‑100 (MQ=255)
                                                                                      cgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               <  2:1532598/100‑1 (MQ=255)
                                                                                       gtgacgtATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCa              >  1:849100/7‑100 (MQ=38)
                                                                                       gtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               >  2:3453711/1‑99 (MQ=255)
                                                                                        tgACTATCAGGCCCCTGCTACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCag             <  2:719194/100‑1 (MQ=255)
                                                                                         gACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCaga            >  1:1000632/1‑100 (MQ=255)
                                                                                         gACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCaga            <  1:2883509/100‑1 (MQ=255)
                                                                                             tATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGAc         <  1:809838/100‑1 (MQ=255)
                                                                                               tCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACaa       >  2:1395772/1‑100 (MQ=255)
                                                                                                  ggCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATaa    <  2:2587241/100‑1 (MQ=255)
                                                                                                  ggCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAAATTCAATCTCTGCAAAGACAAt      >  2:3548597/1‑98 (MQ=255)
                                                                                                    ccccTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAAcc  <  1:2907900/100‑1 (MQ=255)
                                                                                                    |                                                                                                   
CAGGGTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAACC  >  NC_000913/2449516‑2449714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: