Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,449,616 C→G 16.1% G145A (GGG→GCG) ‡ yfcO ← DUF2544 family putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,449,6160CG16.1% 402.6 / 65.1 152G145A (GGG→GCG) yfcODUF2544 family putative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base C (66/60);  new base G (10/14);  total (76/76)
Fisher's exact test for biased strand distribution p-value = 3.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.01e-01

Only 100 of 157 total aligned reads displayed.

GGGTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAACC  >  NC_000913/2449518‑2449714
                                                                                                   |                                                                                                  
gggTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGccc                                                                                                   <  1:41245/100‑1 (MQ=255)
 ggTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGcccc                                                                                                  >  1:27765/1‑100 (MQ=255)
   tGAGCAGTTGTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTg                                                                                                <  2:2024632/100‑1 (MQ=255)
    gAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTg                                                                                                >  2:1091212/1‑99 (MQ=255)
    gAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGa                                                                                               <  2:804127/100‑1 (MQ=255)
     aGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGAt                                                                                              >  1:3126037/1‑100 (MQ=255)
      gCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATa                                                                                             >  2:3734726/1‑100 (MQ=255)
       cAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATAc                                                                                            <  2:910376/100‑1 (MQ=255)
       cAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATAc                                                                                            <  1:486091/100‑1 (MQ=255)
         gTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGt                                                                                          >  1:1415608/1‑100 (MQ=255)
          ttttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATagtc                                                                                          <  1:2840493/100‑4 (MQ=38)
          ttttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTc                                                                                         <  2:158238/100‑1 (MQ=255)
            ttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCAc                                                                                       <  2:2638077/100‑1 (MQ=38)
            ttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCAc                                                                                       <  1:987720/100‑1 (MQ=255)
            ttGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCAc                                                                                       <  2:35488/100‑1 (MQ=255)
             tGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACg                                                                                      <  2:506862/100‑1 (MQ=38)
              gACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGc                                                                                     <  2:325548/100‑1 (MQ=255)
               aCTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgac                                                                                    <  1:31609/100‑3 (MQ=37)
                cTTACTGACGTTATTCTCATTCCATGAAACGTCATATGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGACCTGATagaaacgaca                                                                                    <  2:1090918/100‑10 (MQ=255)
                cTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgaca                                                                                   <  2:698356/100‑4 (MQ=37)
                 ttACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacac                                                                                  <  1:718648/100‑5 (MQ=37)
                  tACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacacg                                                                                 <  2:541317/100‑6 (MQ=25)
                  tACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacaag                                                                                 >  1:698363/1‑95 (MQ=25)
                   aCTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacacga                                                                                <  2:3460141/100‑7 (MQ=25)
                    cTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATTAGGCCCCTGATACGTCACGCCCCCTg                                                                               >  1:1909851/1‑100 (MQ=255)
                      gACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGga                                                                             >  1:340292/1‑100 (MQ=255)
                       aCATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACGTATCAGGGGCCTGATAGTCACgacacgatttg                                                                            <  1:1757621/100‑11 (MQ=21)
                        gaTAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGgaga                                                                           <  1:634400/99‑1 (MQ=255)
                        cATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGgaga                                                                           >  1:3784776/1‑100 (MQ=255)
                          tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAgg                                                                         >  2:1514082/1‑100 (MQ=255)
                          tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAgg                                                                         >  1:2469768/1‑100 (MQ=255)
                          tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAgg                                                                         >  1:2469496/1‑100 (MQ=255)
                          tAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAgg                                                                         >  1:2315677/1‑100 (MQ=255)
                             ttCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCtt                                                                      >  1:1650646/1‑100 (MQ=255)
                             ttCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCtt                                                                      >  2:2950104/1‑100 (MQ=255)
                                tcATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCag                                                                   >  2:1783965/1‑100 (MQ=255)
                                tcATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCag                                                                   <  1:924278/100‑1 (MQ=255)
                                  aTTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCagag                                                                 <  1:1946101/100‑1 (MQ=255)
                                     ccATGAAACGTCATAAGGTTGAACAGAAACGTATAGACAAAGCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCTCCCTGCAGAGGCTTCAGAGtc                                                               <  2:1332299/99‑1 (MQ=255)
                                       aTGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATCCGTCACGCCCCCTGGAGAGGCTTCAGAGtcatt                                                            >  1:3317220/1‑100 (MQ=255)
                                        tGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGtcattc                                                           <  1:470616/100‑1 (MQ=255)
                                           aaCGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCata                                                        <  2:1238033/100‑1 (MQ=255)
                                           aaCGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCata                                                        <  2:733315/100‑1 (MQ=255)
                                           aaCGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCata                                                        >  2:63835/1‑100 (MQ=255)
                                             cGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCataat                                                      <  1:519673/100‑1 (MQ=255)
                                              gTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCataata                                                     <  1:1560737/100‑1 (MQ=255)
                                               tCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATAAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCAtaataa                                                    >  2:2962032/1‑100 (MQ=255)
                                                  tAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATaacca                                                 >  1:3605688/1‑100 (MQ=255)
                                                  tAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGACCCTGATACGTCACGCGCCCTGGAGAGGCTTCAGAGTCATTCATAATaacca                                                 >  2:1249723/1‑100 (MQ=255)
                                                     ggTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGTAGAGGCTTCAGAGTCATTCATAATaaccaaac                                              >  2:2876054/1‑98 (MQ=255)
                                                     ggTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATaaccaacc                                              <  1:2778994/100‑1 (MQ=255)
                                                      gTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAaccaacca                                             >  2:2111128/1‑100 (MQ=255)
                                                       ttGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGACTTCAGAGTCATTCATAATAACCAACCAt                                            >  2:2295763/1‑100 (MQ=255)
                                                        tGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATg                                           <  1:3421364/100‑1 (MQ=255)
                                                         gAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATgg                                          >  1:2282249/1‑100 (MQ=255)
                                                           aCAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGAc                                        <  1:2802199/100‑1 (MQ=255)
                                                           aCAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGAc                                        <  2:582978/100‑1 (MQ=255)
                                                           aCAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGAc                                        >  1:1209849/1‑100 (MQ=255)
                                                            cAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACa                                       >  1:2103836/1‑100 (MQ=255)
                                                            cAGAAACGGATGGACAAATCGTGTCGAGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACa                                       >  1:2318976/1‑100 (MQ=255)
                                                              gAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCAAGCCCCCAGGAGAGGCTTCAGAGTAATTCATAATAACCAACCATGGACAAg                                     >  2:3236271/1‑100 (MQ=255)
                                                              gAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGGCACGCCGCCGGGAGAGGCTTCAGAGGCATTCATAATAACCAACCATGGACAAg                                     >  2:1268863/1‑100 (MQ=255)
                                                                aaCGGATGGACAAATCGTGTCGTGACTACCAGGCCCCTGATACGTCACGCCCCCTGGCGAGGCATCAGAGTCATTCATAATAACCAACCATGGACAAGa                                    >  1:3201948/1‑99 (MQ=255)
                                                                  cGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGaaaa                                 >  2:2762860/1‑100 (MQ=255)
                                                                   ggATGGACAAATCGTGTCGTGACTATCACGCCCCTGATACGTCACGCCCCCTTCAGAAGCTTCAAAGTCATTCATAATAACCAACCATGGACAAGAAAAg                                <  2:2490829/100‑1 (MQ=255)
                                                                   ggATGGACAAATCGGGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAg                                <  1:1664057/100‑1 (MQ=255)
                                                                     aTGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCGTTCATAATAACCAACCATGGACAAGAAAAGTa                              <  2:3514682/100‑1 (MQ=255)
                                                                     aTGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTa                              <  1:1811388/100‑1 (MQ=255)
                                                                       ggACAAATTGTGTCTTGACTATCAGGCCCCTGATACGTGACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAGGAAAAg                                <  2:1563629/96‑1 (MQ=255)
                                                                        gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCGCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAgn                           <  2:2436916/100‑2 (MQ=255)
                                                                        gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGa                           >  2:435466/1‑100 (MQ=255)
                                                                        gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGa                           >  2:1860767/1‑100 (MQ=255)
                                                                        gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGa                           <  1:949883/100‑1 (MQ=255)
                                                                        gACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGa                           >  1:2933524/1‑100 (MQ=255)
                                                                           aaaTCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTc                        >  1:2955491/1‑100 (MQ=255)
                                                                           aaaTCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTc                        >  2:338523/1‑100 (MQ=255)
                                                                             gatctgtcgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCaa                      <  2:1634457/96‑1 (MQ=255)
                                                                               cgtgtcgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtc                    <  2:3610549/100‑1 (MQ=255)
                                                                               cgtgtcgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtc                    <  1:1408325/100‑1 (MQ=255)
                                                                                gtgtcgtgCCTATCAGGCTCCTGATACGTCACGCCCCCTGGAGAGACTTCAAAGTCATTATTAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtc                    <  2:2829178/99‑1 (MQ=255)
                                                                                ggggcgtgACGTATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAAtct                   >  2:779640/5‑100 (MQ=37)
                                                                                  gtcgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATctct                 >  1:1709589/1‑100 (MQ=255)
                                                                                   tcgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTg                <  2:3420552/100‑1 (MQ=255)
                                                                                   tcgtgACTATCACGCCCCTCATACGTCACGCCCCCTGGAGACGCTTCATAGTCATTCATAATAACCAACCATTGACAAGAAAAGTAAGATTCAATctct                 <  2:1482342/99‑1 (MQ=255)
                                                                                    cgtgACGTATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               >  1:1027190/1‑100 (MQ=38)
                                                                                    cgtgACGTATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAAACAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               >  1:1261535/1‑100 (MQ=37)
                                                                                    cgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               >  1:1393483/1‑100 (MQ=255)
                                                                                    cgtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               <  2:1532598/100‑1 (MQ=255)
                                                                                     gtgacgtATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCa              >  1:849100/7‑100 (MQ=38)
                                                                                     gtgacgtATCAGGGGCCTGATAGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCa              >  1:3683482/7‑100 (MQ=38)
                                                                                     gtgACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGc               >  2:3453711/1‑99 (MQ=255)
                                                                                      tgACTATCAGGCCCCTGCTACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCag             <  2:719194/100‑1 (MQ=255)
                                                                                       gACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCaga            >  1:1000632/1‑100 (MQ=255)
                                                                                       gACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCaga            <  1:2883509/100‑1 (MQ=255)
                                                                                           tATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGAc         <  1:809838/100‑1 (MQ=255)
                                                                                            aTCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACa        <  2:3112915/100‑1 (MQ=255)
                                                                                             tCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACaa       >  2:1395772/1‑100 (MQ=255)
                                                                                                ggCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATaa    <  2:2587241/100‑1 (MQ=255)
                                                                                                  ccccTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAAcc  <  1:1436542/100‑1 (MQ=255)
                                                                                                  ccccTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAAcc  <  1:2907901/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
GGGTGAGCAGTTTTGACTTACTGACATAATTCTCATTCCATGAAACGTCATAAGGTTGAACAGAAACGGATGGACAAATCGTGTCGTGACTATCAGGCCCCTGATACGTCACGCCCCCTGGAGAGGCTTCAGAGTCATTCATAATAACCAACCATGGACAAGAAAAGTAAGATTCAATCTCTGCAGAGACAATAACC  >  NC_000913/2449518‑2449714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: