Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,171,863 A→G 15.1% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,171,8630AG15.1% 410.7 / 63.1 184intergenic (+30/+16)qseC/ygiZquorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
Reads supporting (aligned to +/- strand):  ref base A (80/76);  new base G (17/11);  total (97/87)
Fisher's exact test for biased strand distribution p-value = 4.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.51e-02

Only 100 of 185 total aligned reads displayed.

ATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACATATACCC  >  NC_000913/3171764‑3171958
                                                                                                   |                                                                                               
   gcatggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGActc                                                                                              >  1:1068454/1‑100 (MQ=255)
   gcatggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGActc                                                                                              >  1:1405966/1‑100 (MQ=255)
    catggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGctct                                                                                             <  2:3221830/100‑1 (MQ=38)
      tggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCa                                                                                           >  2:1689093/1‑100 (MQ=255)
       ggcatgAATGTTGAATTTGGGGATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCGCTGTCTATGAGAGTCGTTTTAACGGCTCTCAt                                                                                          <  1:3645132/100‑1 (MQ=38)
       ggcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCAt                                                                                          <  1:2427483/100‑1 (MQ=255)
        gcatgAATGTTGAGTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGGAAGCGGGTAACGGCACTGTGTGGGAGAGACCTTCAGAAGACCCTCAt                                                                                          <  2:3074256/99‑1 (MQ=255)
        gcatgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATa                                                                                         <  1:121409/100‑1 (MQ=38)
         catgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAg                                                                                        <  2:2811941/100‑1 (MQ=38)
         catgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAg                                                                                        <  2:1002717/100‑1 (MQ=38)
         catgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCTCATAg                                                                                        <  1:3739486/100‑1 (MQ=38)
         catgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGTCGTTTTAACGGCTCACATAg                                                                                        <  2:1515802/100‑1 (MQ=38)
         catgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAg                                                                                        <  1:825224/100‑1 (MQ=255)
         cataAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATa                                                                                         >  2:1165584/1‑99 (MQ=255)
           tgAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGAt                                                                                      >  2:2748772/1‑100 (MQ=255)
           tgAATGTTGAATTTGGGAATGCGGAACAAGGTAGATTTGCGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGAt                                                                                      <  2:3239825/100‑1 (MQ=255)
                gTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc                                                                                 <  1:322297/100‑1 (MQ=255)
                gTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc                                                                                 <  2:560990/100‑1 (MQ=255)
                gTTGAATTTGGGAATGCGCAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCGGTTAAAACGACTCTCATAGATTTTAc                                                                                 >  2:455932/1‑100 (MQ=255)
                 ttGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACt                                                                                <  1:1907206/100‑1 (MQ=255)
                 ttGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACt                                                                                >  2:1346616/1‑100 (MQ=255)
                 ttGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACt                                                                                <  1:1231484/100‑1 (MQ=255)
                   gAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTaa                                                                              >  2:358532/1‑100 (MQ=255)
                   gAATTTGGGAATGCGGAACAAAGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTaa                                                                              <  2:232190/100‑1 (MQ=255)
                     aTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa                                                                            <  1:604255/100‑1 (MQ=255)
                          ggAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCaaa                                                                       >  2:3147238/1‑100 (MQ=255)
                           gAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCaaaa                                                                      <  2:167553/100‑1 (MQ=255)
                           gAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCaaaa                                                                      <  1:630938/100‑1 (MQ=255)
                              tGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTTATAGCATAatat                                                                   >  2:2952361/1‑100 (MQ=255)
                                cGGAACAAGGTGGATTTGAGGCGAAGGTAAACTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAACATATaa                                                                 >  2:1829885/1‑100 (MQ=255)
                                 ggAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATaaa                                                                >  1:2216038/1‑100 (MQ=255)
                                    aCAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTATCATAGATTTTACTAATAGCAAAATATAAACCg                                                             >  1:1867972/1‑100 (MQ=255)
                                        ggTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTccc                                                         <  2:2738878/100‑1 (MQ=255)
                                        ggTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTccc                                                         >  2:338214/1‑100 (MQ=255)
                                            gATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCaaa                                                     >  2:967127/1‑100 (MQ=255)
                                                tGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAg                                                 >  1:213101/1‑100 (MQ=255)
                                                tGAGGCGAAGGTAAGCTGGTAACTTATATGTCTATGAGAGTCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAg                                                 <  2:3804226/100‑1 (MQ=255)
                                                  aGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcc                                               <  1:1421365/100‑1 (MQ=255)
                                                   ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcca                                              <  2:285019/100‑1 (MQ=255)
                                                   ggCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGcc                                               >  2:2365838/1‑99 (MQ=255)
                                                     cGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGccacc                                            >  1:375777/1‑100 (MQ=255)
                                                      gAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGccacca                                           <  2:2572162/100‑1 (MQ=255)
                                                      gAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGccacca                                           <  2:1646770/100‑1 (MQ=255)
                                                         ggTAAGCTGGTAACTGCTCTGTCGATGAGAGTCGTTAAAACGACTCTCATAGATTTTACATATAGCAAAATATCAACCGTACCCTAAAAAGCCaccatcc                                        <  2:3292766/100‑1 (MQ=255)
                                                          gTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCaccaacca                                       <  2:2230655/100‑1 (MQ=255)
                                                             aGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACaa                                    >  2:2533847/1‑100 (MQ=255)
                                                             aGCTGGTAACTTCTCTGTCTATGAGAGCCATTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACaa                                    <  1:3808762/100‑1 (MQ=255)
                                                              gCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACaaa                                   >  2:1052290/1‑100 (MQ=255)
                                                               cTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAAc                                  <  2:1432957/100‑1 (MQ=255)
                                                               cTGGTAACTTCTCTGTCTATGAGAGCCGGTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAAc                                  <  1:548159/100‑1 (MQ=255)
                                                                tGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAAcc                                 <  1:2815177/100‑1 (MQ=255)
                                                                tGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAAcc                                 >  1:2832656/1‑100 (MQ=255)
                                                                 gttAACTTCTCTGTCTATGAGAGCCGTTAAAACAACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACTACAAAcc                                 <  2:2000680/97‑1 (MQ=255)
                                                                 ggTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCa                                <  2:1580176/100‑1 (MQ=255)
                                                                 ggTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCa                                >  1:76934/1‑100 (MQ=255)
                                                                 ggTAACTGCTCTGTCTATTGGAGCCGTTAAATCGACACTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAATAAAGCCACCAACCACAAACCa                                <  2:886633/100‑1 (MQ=255)
                                                                  gTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAg                               >  1:2896082/1‑100 (MQ=255)
                                                                  gTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAg                               <  1:2099566/100‑1 (MQ=255)
                                                                   tAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAg                               <  2:822691/99‑1 (MQ=255)
                                                                    aaCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGAc                             <  1:1030097/100‑1 (MQ=255)
                                                                    aaCTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGAc                             >  1:1960011/1‑100 (MQ=255)
                                                                     acttccatctCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGAc                             <  1:2621405/90‑1 (MQ=255)
                                                                      cTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCTCCAAAAAAGCCACCAACCACAAACCAGATaa                           >  1:760562/1‑100 (MQ=255)
                                                                      cTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACaa                           >  1:1910375/1‑100 (MQ=255)
                                                                        gtaaaatCTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAAt                         >  1:1671418/7‑100 (MQ=25)
                                                                         taaaatCTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATa                        >  2:3494911/6‑100 (MQ=25)
                                                                           ctGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATAcc                      >  1:2498445/1‑100 (MQ=255)
                                                                           ctGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATAcc                      >  2:689053/1‑100 (MQ=255)
                                                                            tGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcg                     >  1:1357031/1‑100 (MQ=255)
                                                                            tGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcg                     <  1:358534/100‑1 (MQ=255)
                                                                             gTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcga                    >  1:2673355/1‑100 (MQ=255)
                                                                              tCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgag                   <  1:2054233/100‑1 (MQ=255)
                                                                               cTATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagc                  >  1:1601782/1‑100 (MQ=38)
                                                                               cTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagc                  >  1:3299075/1‑100 (MQ=255)
                                                                                tATGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcg                 >  1:2384629/1‑100 (MQ=38)
                                                                                tATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcg                 >  2:1329759/1‑100 (MQ=255)
                                                                                 aTGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcga                >  1:1992720/1‑100 (MQ=38)
                                                                                 aTGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcga                >  1:2968255/1‑100 (MQ=38)
                                                                                 aTGAGAGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgaacga                >  2:872424/1‑100 (MQ=38)
                                                                                 aTGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACcgagcga                >  1:1533780/1‑100 (MQ=255)
                                                                                   gagaGTCGTTTTAACGGCTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCgaga              >  2:165364/1‑100 (MQ=38)
                                                                                   gagaGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCgaga              >  1:3004291/1‑100 (MQ=255)
                                                                                   gagaGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCgaga              >  2:3704087/1‑100 (MQ=255)
                                                                                     gagCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAAt            <  2:2067507/100‑1 (MQ=255)
                                                                                     gagCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAAt            >  1:1787382/1‑100 (MQ=255)
                                                                                     gagCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAAt            <  2:521435/100‑1 (MQ=255)
                                                                                     gagCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCACAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAAt            >  2:3217508/1‑100 (MQ=255)
                                                                                       gCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATAc          >  1:277386/1‑100 (MQ=255)
                                                                                       gCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATAc          >  1:3068410/1‑100 (MQ=255)
                                                                                       gCCGCTAAATCGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATAc          <  1:529898/100‑1 (MQ=255)
                                                                                        ccGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACa         <  2:1289499/100‑1 (MQ=255)
                                                                                         cGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACat        >  2:1795652/1‑100 (MQ=255)
                                                                                         cGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACat        >  2:56383/1‑100 (MQ=255)
                                                                                          gTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACGGAGCGAGAATACaaa       >  1:2178768/1‑98 (MQ=255)
                                                                                          gTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACata       <  2:3662097/100‑1 (MQ=255)
                                                                                          gTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACata       <  1:507471/100‑1 (MQ=255)
                                                                                          gTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGACCCCAAAAAAGCCACCGACCACAAACCAGACAAATACCGAGCGAGAATACata       >  1:2682736/1‑100 (MQ=255)
                                                                                          gTTAAAACGACTCTAATCGATTATACAACTAGCAAAAAATAAACCGAAACCAAAAGAGCCACCAACCACAAACCAGACAAATACCGAGCGataata           <  2:3572451/96‑1 (MQ=255)
                                                                                               aaCGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACATATAccc  <  1:1284851/100‑1 (MQ=255)
                                                                                               aaCGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACATATAccc  <  1:3408458/100‑1 (MQ=255)
                                                                                                   |                                                                                               
ATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAAAAGCCACCAACCACAAACCAGACAAATACCGAGCGAGAATACATATACCC  >  NC_000913/3171764‑3171958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: