| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,970 | G→A | 24.7% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,970 | 0 | G | A | 24.7% | 508.4 / 153.5 | 247 | intergenic (‑180/+128) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (85/101); new base A (54/7); total (139/108) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.03e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.39e-01 | |||||||||||
Only 100 of 260 total aligned reads displayed.
CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 | cAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATg < 1:922700/100‑1 (MQ=255)cAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATg < 1:2643282/100‑1 (MQ=255) aGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgc < 1:2975533/100‑1 (MQ=255) aGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgc < 2:3252070/100‑1 (MQ=255) gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 1:1904255/1‑100 (MQ=255) aTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGAGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGt > 2:2656873/1‑100 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 1:1181234/100‑1 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 2:3080685/100‑1 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt < 2:3658811/100‑1 (MQ=255) gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 1:3152769/100‑1 (MQ=255) gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 1:2451423/100‑1 (MQ=255) gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 2:479171/100‑1 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc > 2:238128/1‑100 (MQ=255) tgctgcCGGATGGCGCTGCAGGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:2327405/1‑100 (MQ=255) tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:3728242/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:1793100/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2105192/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:3123439/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:3082497/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:241716/1‑100 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGTTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 1:796663/100‑1 (MQ=37) cGGATGGCGCTGCACGCAGAGGCACAGAGCCACCGGGTACACAGATTGTTGACAAAGTGCACTTTGTTTATTCCGAATGCGGCGTTAACGCCTTATCCg > 2:3456794/1‑99 (MQ=25) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:3401360/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3307969/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3691514/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa > 2:376874/1‑100 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGCTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaa < 2:1157721/100‑2 (MQ=25) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaac < 1:3450998/100‑7 (MQ=25) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCGTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaaac < 1:2034563/100‑4 (MQ=25) cgcTGCACCCAGAGGCACAGCGCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCAGCCGGCATaaa < 2:3592721/99‑3 (MQ=21) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaaaa < 2:5648/100‑1 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATc > 1:1083245/1‑100 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGt < 2:430322/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg > 1:3435862/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg > 2:967951/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 1:3714160/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 1:3817292/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACACATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCAGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 2:2290059/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCa < 2:120833/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTc > 2:1401931/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 1:1099019/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa < 1:2390026/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAt < 2:110714/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAtt > 1:1150963/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAtt > 1:2515687/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTg < 1:1439973/100‑1 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGc < 2:1616706/100‑1 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGc > 1:1962631/1‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGc < 1:976818/100‑1 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGc < 2:1214979/100‑1 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑a < 2:2807935/100‑1 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑Ga > 1:446179/1‑100 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAt < 2:1882066/100‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAttt > 2:2846995/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAttt > 2:3339301/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAtttt > 1:2234311/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTACGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAAtttt > 2:180599/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑g > 2:2249496/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGc > 2:1122334/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGcc > 1:912497/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGAt > 1:1678092/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATa > 1:1760043/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATa < 2:2198370/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGc > 1:656338/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCgg < 1:2170767/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAg < 1:3339326/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:2677106/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:1598521/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:61407/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAACCGGAgcg > 2:593317/1‑100 (MQ=255) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcgc < 1:734008/100‑1 (MQ=255) tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:3771752/1‑99 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:3634411/100‑1 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:1312236/100‑1 (MQ=255) ttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGCGCGCATc > 2:1453080/7‑100 (MQ=17) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1316302/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATACAAAAGCGTGCAAATTCAATACATTGC‑‑ATGGGCCAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1926802/5‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAACAGTGCAAATTCAATATATTGC‑‑A‑ATCTTCTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGc > 2:2944901/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGC‑‑A‑‑ATATGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 1:1479990/3‑99 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGATCGTGCAAATTCAATATATTGC‑‑A‑TGAGCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2557204/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAACCGCGCAAATTCAATATATTGCGGA‑GAAAAT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:3467828/3‑99 (MQ=21) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:2116630/3‑100 (MQ=17) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:987211/1‑100 (MQ=255) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGC‑‑AGGGACTAT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 1:3258235/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACATGCAAATTCAATAGATTGC‑‑A‑GAGATTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2461991/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GGAGTTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:3785975/2‑100 (MQ=21) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:3595745/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTTCAAAATCGTGCAAATTCAACATATTGC‑‑A‑ATTCTCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:1675857/1‑98 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGC‑‑A‑‑ATATGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 1:1139482/1‑97 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGC‑‑A‑GGAGCTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1234710/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑AATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:3191290/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGC‑‑A‑GGGACTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 1:50490/1‑99 (MQ=18) gCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:858963/1‑100 (MQ=18) gCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1383822/1‑100 (MQ=18) ccGGATAAGGCGTTCGCGCCGCATCCGGCCTACAAAAGTTTGCAAATTCAATAAATTGC‑‑A‑GAATTCAT‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAtt > 1:1516480/1‑100 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 1:2923840/1‑100 (MQ=255) cGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGC‑‑A‑GTTTATTG‑‑GAAGGCCTGATAAGCGCAGCGCATGAGGCaatc > 1:1367584/1‑97 (MQ=21) aTGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1863991/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:3802578/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1574290/100‑1 (MQ=255) | CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGC‑‑A‑GAATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |