Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,312,074 C→T 18.2% intergenic (‑32/+27) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,312,0740CT18.2% 432.9 / 79.0 193intergenic (‑32/+27)alsB/alsRD‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
Reads supporting (aligned to +/- strand):  ref base C (83/74);  new base T (14/21);  total (97/96)
Fisher's exact test for biased strand distribution p-value = 1.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.82e-01

Only 100 of 195 total aligned reads displayed.

AAAAGCGCTGGTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCA  >  NC_000913/4311977‑4312173
                                                                                                 |                                                                                                   
aaaaGCGCTGGTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTc                                                                                                   >  2:1341148/1‑100 (MQ=255)
 aaaGCGCTGGTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTcc                                                                                                  >  1:1411539/1‑100 (MQ=255)
      gcTGGTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGAt                                                                                             >  2:1060378/1‑100 (MQ=255)
      gcTGGTTGACAACATTAAGCCCACGAGGGTGCTGCTGAAATATTTCAGATATTTATTCATATTAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGAt                                                                                             <  1:788539/100‑1 (MQ=255)
          gTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCg                                                                                         <  1:2401682/100‑1 (MQ=255)
          gTTGACAACATTAAGCCCACGAGTGGGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCg                                                                                         <  2:463860/100‑1 (MQ=255)
           ttGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCgg                                                                                        >  1:76924/1‑100 (MQ=255)
            tGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGa                                                                                       >  1:3789519/1‑100 (MQ=255)
             gACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTACGGGGACAGGTAACTCCGCGATGGCGGaa                                                                                      >  2:3471645/1‑100 (MQ=255)
             gACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCgg                                                                                        >  2:3718009/1‑98 (MQ=255)
             gACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGaa                                                                                      <  1:693045/100‑1 (MQ=255)
             gACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGaa                                                                                      >  2:632778/1‑100 (MQ=255)
              acaacaTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAAt                                                                                     >  1:613524/1‑100 (MQ=255)
                aacaTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTa                                                                                   <  1:3228174/100‑1 (MQ=255)
                  caTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTAcc                                                                                 <  1:1674358/100‑1 (MQ=38)
                  caTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTAcc                                                                                 <  1:2378372/100‑1 (MQ=38)
                  caTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTAcc                                                                                 <  2:2168355/100‑1 (MQ=255)
                   aTTAAGCCCACGAGTTTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCt                                                                                <  1:3763302/100‑1 (MQ=255)
                   aTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCt                                                                                >  1:2827910/1‑100 (MQ=255)
                     tAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgt                                                                              <  2:3455269/100‑3 (MQ=38)
                      aaGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtc                                                                             <  2:1741689/100‑4 (MQ=38)
                      aaGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtc                                                                             <  1:2939917/100‑4 (MQ=38)
                       aGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtcc                                                                            <  1:1011804/100‑5 (MQ=37)
                        gCCCACGAGTGTGCCGTTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtccc                                                                           <  2:3141258/100‑6 (MQ=37)
                        gCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtccc                                                                           <  1:2281236/100‑6 (MQ=37)
                        gCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTc                                                                           >  2:1490020/1‑100 (MQ=255)
                        gCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTc                                                                           <  2:2424964/100‑1 (MQ=255)
                         cccACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCCCGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCt                                                                          <  2:2114352/100‑1 (MQ=255)
                         cccACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtcccc                                                                          <  1:236938/100‑7 (MQ=25)
                         cccACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCt                                                                          >  2:2412851/1‑100 (MQ=255)
                              gaataaatatcTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTAttt                                                                     >  1:1722679/11‑100 (MQ=255)
                                   tgCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAgcg                                                                >  1:3499841/1‑100 (MQ=255)
                                    gCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAgcgc                                                               <  1:1474897/100‑1 (MQ=255)
                                     ccGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAgcgcg                                                              >  2:2051526/1‑100 (MQ=255)
                                        cTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCt                                                           >  2:2898163/1‑100 (MQ=255)
                                         tGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTg                                                          <  1:1147733/100‑1 (MQ=255)
                                         tGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTg                                                          <  2:397574/100‑1 (MQ=255)
                                          gAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCt                                                           <  1:3308777/98‑1 (MQ=255)
                                           aaaTATTTCAGATATTTATTCATAATAATGTTCTCACTGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTgg                                                         <  2:1877440/99‑1 (MQ=255)
                                            aaTATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTg                                                       <  1:1648519/100‑1 (MQ=255)
                                            aaTATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTGTTCTTATTTCAGCGCGCCTGGTg                                                       <  1:970379/100‑1 (MQ=255)
                                                 ttCAGATATTTATTCATAATAATGTTCTCACGGTAAGGTGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGagaag                                                  <  2:2087725/100‑1 (MQ=255)
                                                 ttCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGagaag                                                  <  1:869140/100‑1 (MQ=255)
                                                  tCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGCATTACCTTTTTCTTATTTCAGCGCGCCTGGTGagacga                                                 >  1:1825092/1‑100 (MQ=255)
                                                      atatTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATc                                             <  1:3733756/100‑1 (MQ=255)
                                                       tatttattCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCAGCGATGGCGGCATTACCTTTTTCTTATTTCAGCGCGCCTGGTAACACGAAATc                                             >  2:1299973/1‑99 (MQ=255)
                                                       tattcagtCAAAATAATGTTCTCACGATAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATca                                            <  2:1713/100‑1 (MQ=255)
                                                         tttattCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTGCCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATcaac                                          <  2:2589673/100‑1 (MQ=255)
                                                         tttattCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATcaac                                          <  2:2551581/100‑1 (MQ=255)
                                                              tCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTg                                     <  1:1760597/100‑1 (MQ=255)
                                                               cATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTgc                                    >  1:1056227/1‑100 (MQ=255)
                                                               cATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTgc                                    >  2:3673288/1‑100 (MQ=255)
                                                                ataataATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTgcg                                   <  1:2457856/100‑1 (MQ=255)
                                                                 taataaTGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGCATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAACAAACAATTgcgc                                  >  2:2926306/1‑100 (MQ=255)
                                                                 taataaTGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCTGGCCTGGTGAGAAGAAATCAACAATTgc                                    >  2:684911/1‑98 (MQ=255)
                                                                 taataaTGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTgcgc                                  <  2:3552425/100‑1 (MQ=255)
                                                                  aataatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGcc                                 >  1:3288257/1‑100 (MQ=255)
                                                                  aataatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGcc                                 <  1:1328560/100‑1 (MQ=255)
                                                                   atcatGTTCGCACGGTGAGGGGACACGTAACTTCGCGATGACGGAATTACCTTTTTCTTATTTCTGCGCGCCTGGTGAGAAGAAATCAACAATTGCGcc                                 <  2:3037728/96‑1 (MQ=255)
                                                                    taatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCgg                               >  1:818920/1‑100 (MQ=255)
                                                                       tGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGttt                            >  1:3033373/1‑100 (MQ=255)
                                                                        gTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGtttt                           >  1:2351717/1‑100 (MQ=255)
                                                                          tctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGtttttt                         >  1:3618239/1‑100 (MQ=255)
                                                                           ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTTCGCCGGTTTTTTg                        >  2:3304163/1‑100 (MQ=255)
                                                                           ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                        <  2:718518/100‑1 (MQ=255)
                                                                           ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                        <  1:3673315/100‑1 (MQ=255)
                                                                           ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                        >  1:2017559/1‑100 (MQ=255)
                                                                           ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                        >  1:1248463/1‑100 (MQ=255)
                                                                           ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                        <  2:1289568/100‑1 (MQ=255)
                                                                            tcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCCCCGGTTTTTTGc                       <  1:2511142/100‑1 (MQ=255)
                                                                             cACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCa                      <  2:1670177/100‑1 (MQ=255)
                                                                             cACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCa                      >  1:2885435/1‑100 (MQ=255)
                                                                               cGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCata                    >  2:828900/1‑100 (MQ=255)
                                                                               cGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCata                    >  2:1659049/1‑100 (MQ=255)
                                                                                  tAAGGGGACAGGTACAGCCGCGATGGGGGAATTACCTTTTTCTTATTTCAGCGCGGCTGGTGAGAAGAAATCAACGATTGCGCCGGTTGTTTGCatgtt                  <  2:2265910/99‑1 (MQ=255)
                                                                                    aagaaaaaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaat               >  1:1062442/8‑100 (MQ=25)
                                                                                     ggggACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaata              >  2:2679992/1‑100 (MQ=255)
                                                                                     ggggACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaata              <  2:2751533/100‑1 (MQ=255)
                                                                                      gggACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaatat             >  2:1113483/1‑100 (MQ=255)
                                                                                       ggACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaatatt            >  1:2891241/1‑100 (MQ=255)
                                                                                         aaaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAg          >  2:249186/3‑100 (MQ=38)
                                                                                          cAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGc         >  2:3177197/1‑100 (MQ=255)
                                                                                          cAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGc         >  1:3439871/1‑100 (MQ=255)
                                                                                          aaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGc         >  2:1871003/2‑100 (MQ=38)
                                                                                          aaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGc         >  2:43317/2‑100 (MQ=38)
                                                                                           aGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCATCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCt        >  2:1390586/1‑100 (MQ=38)
                                                                                           aGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCt        >  1:738531/1‑100 (MQ=38)
                                                                                           aGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCt        >  1:1505960/1‑100 (MQ=38)
                                                                                           aGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCt        <  1:392497/100‑1 (MQ=255)
                                                                                           aGGTAACTCCCCGATCGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCt        <  2:1226612/100‑1 (MQ=255)
                                                                                            ggTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCATCACGCCTGGTAAGAAGCAATCAACATTTGCGCCAGCTTTTTGGATATTAatcttatctt       >  2:2138890/1‑100 (MQ=255)
                                                                                            ggTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCtt       >  1:2149929/1‑100 (MQ=255)
                                                                                             gTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTg      <  1:221062/100‑1 (MQ=255)
                                                                                             gTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTg      <  2:1557988/100‑1 (MQ=255)
                                                                                               aaCTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGtt    <  2:757413/100‑1 (MQ=255)
                                                                                                aCTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTc   <  1:956802/100‑1 (MQ=255)
                                                                                                aCTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTc   <  1:2119523/100‑1 (MQ=255)
                                                                                                aCTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTc   >  2:778621/1‑100 (MQ=255)
                                                                                                 cTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTTGCTTGTTCa  >  1:1889821/1‑100 (MQ=255)
                                                                                                 cTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCa  >  1:3084440/1‑100 (MQ=255)
                                                                                                 |                                                                                                   
AAAAGCGCTGGTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCA  >  NC_000913/4311977‑4312173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: