Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,312,083 G→C 18.1% intergenic (‑41/+18) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,312,0830GC18.1% 503.3 / 101.0 198intergenic (‑41/+18)alsB/alsRD‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
Reads supporting (aligned to +/- strand):  ref base G (84/78);  new base C (14/22);  total (98/100)
Fisher's exact test for biased strand distribution p-value = 1.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.66e-01

Only 100 of 201 total aligned reads displayed.

GTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGC  >  NC_000913/4311987‑4312182
                                                                                                |                                                                                                   
gTTGACAACATTAAGCCCACGAGTGGGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCg                                                                                                  <  2:463860/100‑1 (MQ=255)
   gACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCgg                                                                                                 >  2:3718009/1‑98 (MQ=255)
   gACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTGATTCATAATAATGTTCGCCATGTAAGGCGACAGGTAACTCCGCGATGTCGGaa                                                                                               >  2:1659355/1‑100 (MQ=255)
      aacaTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTa                                                                                            <  1:3228174/100‑1 (MQ=255)
        caTTAAGCCCACTAGTGTTCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTAcc                                                                                          <  2:3463862/100‑1 (MQ=38)
        caTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTAcc                                                                                          <  1:681893/100‑1 (MQ=38)
        caTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTAcc                                                                                          <  1:1674358/100‑1 (MQ=38)
        caTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTAcc                                                                                          <  1:439604/100‑1 (MQ=255)
         aTTAAGCCCACGAGTTTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCt                                                                                         <  1:3763302/100‑1 (MQ=255)
         aTTAAGCCCACGAGTGTGCCGCTTAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCt                                                                                         <  2:2209209/100‑1 (MQ=38)
         aTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCt                                                                                         <  2:1396181/100‑1 (MQ=38)
         aTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTAcc                                                                                          <  2:2053203/99‑1 (MQ=255)
         aTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCt                                                                                         <  2:1899971/100‑1 (MQ=255)
         aTTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCt                                                                                         >  1:2827910/1‑100 (MQ=255)
          ttAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtg                                                                                        <  2:1210623/100‑2 (MQ=38)
          ttAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtg                                                                                        <  2:2773518/100‑2 (MQ=38)
            aaGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtc                                                                                      <  1:2939917/100‑4 (MQ=38)
            aaGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCtttt                                                                                      >  1:1475306/1‑100 (MQ=255)
            aaGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTATCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtc                                                                                      <  2:2121918/100‑4 (MQ=37)
             aGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtcc                                                                                     <  1:1011804/100‑5 (MQ=37)
             aGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtcc                                                                                     <  1:78810/100‑5 (MQ=37)
              gCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAATTCCGCCATCGCGGAGTTACCtgtccc                                                                                    <  1:2281236/100‑6 (MQ=37)
                 cACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTa                                                                                 >  2:2303073/1‑100 (MQ=255)
                  aCGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGTGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTa                                                                                 <  2:80696/99‑1 (MQ=255)
                   cGAGTGTGCCGCTGAAATATTTCAGAGATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTAtt                                                                               <  2:1877162/100‑1 (MQ=255)
                    gaataaatatcTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTAttt                                                                              >  1:1722679/11‑100 (MQ=255)
                    gAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGTTAACTCCGCGATGGCGGAATTACCTTTTTCTTAttt                                                                              >  2:738674/1‑100 (MQ=255)
                     aGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTc                                                                             <  1:1647839/100‑1 (MQ=255)
                      gtgtGCCGCTGAGATATTTCAGATATTTATTCATACTAATGTGCTCACGGTAAGGTTTCAGGTTACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCa                                                                            <  2:683035/100‑1 (MQ=255)
                        gtgCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGTTAACTGCACGATGGAGGAATTACCTTGTTCTTATCTCa                                                                            >  2:3477502/1‑98 (MQ=255)
                         tgCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAgcg                                                                         >  1:3499841/1‑100 (MQ=255)
                         tgCCGCTGAAATATTTCAGATATTTATTCATAAGAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGCAACTACCTTTTTCTTATTTCAgcg                                                                         >  2:2526426/1‑100 (MQ=255)
                          gCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAgcgc                                                                        >  1:25078/1‑100 (MQ=255)
                           ccGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAgcgcg                                                                       >  2:3168804/1‑100 (MQ=255)
                               tGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTg                                                                   <  2:397574/100‑1 (MQ=255)
                               tGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTg                                                                   <  1:1147733/100‑1 (MQ=255)
                               tGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTg                                                                   >  2:778307/1‑100 (MQ=255)
                                gAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCt                                                                    <  1:3308777/98‑1 (MQ=255)
                                  aaTATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTg                                                                <  1:388563/100‑1 (MQ=255)
                                     atTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTgaga                                                             >  2:2448914/1‑100 (MQ=255)
                                     atTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTgaga                                                             >  1:718525/1‑100 (MQ=255)
                                       ttCAGATATTTATTCATAATAATGTTCTCACGGTAAGGTGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGagaag                                                           <  2:2087725/100‑1 (MQ=255)
                                        tCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGCATTACCTTTTTCTTATTTCAGCGCGCCTGGTGagacga                                                          >  1:1825092/1‑100 (MQ=255)
                                            atatTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATc                                                      <  1:3733756/100‑1 (MQ=255)
                                             tatttattCAAAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATc                                                      <  1:985990/99‑1 (MQ=255)
                                               tttattCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATcaac                                                   <  2:2588563/100‑1 (MQ=255)
                                                 tattCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATcaacaa                                                 >  2:1305812/1‑100 (MQ=255)
                                                   ttCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAAtt                                               >  2:3241616/1‑100 (MQ=255)
                                                    tCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTg                                              <  1:1760597/100‑1 (MQ=255)
                                                     cATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTgc                                             >  1:1056227/1‑100 (MQ=255)
                                                     cATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTgc                                             >  2:3673288/1‑100 (MQ=255)
                                                      ataataATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTgcg                                            <  1:747900/100‑1 (MQ=255)
                                                       taataaTGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGCATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAACAAACAATTgcgc                                           >  2:2926306/1‑100 (MQ=255)
                                                        aataatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTTAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGcc                                          <  1:2380416/100‑1 (MQ=255)
                                                        aataatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGcc                                          <  1:1328560/100‑1 (MQ=255)
                                                        aataatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGcc                                          <  1:2452646/100‑1 (MQ=255)
                                                        aataatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGcc                                          >  1:3288257/1‑100 (MQ=255)
                                                         atcatGTTCGCACGGTGAGGGGACACGTAACTTCGCGATGACGGAATTACCTTTTTCTTATTTCTGCGCGCCTGGTGAGAAGAAATCAACAATTGCGcc                                          <  2:3037728/96‑1 (MQ=255)
                                                         ataatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCg                                         >  2:3354470/1‑100 (MQ=255)
                                                         ataatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCg                                         >  2:1836826/1‑100 (MQ=255)
                                                          taatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCgg                                        >  2:2661591/1‑100 (MQ=255)
                                                          taatGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCgg                                        >  1:818920/1‑100 (MQ=255)
                                                             tGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGttt                                     >  1:3033373/1‑100 (MQ=255)
                                                              gTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGtttt                                    <  1:961075/100‑1 (MQ=255)
                                                              gTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGtttt                                    >  1:2351717/1‑100 (MQ=255)
                                                               ttCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGttttt                                   >  1:1430260/1‑100 (MQ=255)
                                                                tctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGtttttt                                  >  1:3618239/1‑100 (MQ=255)
                                                                 ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                                 <  1:877977/100‑1 (MQ=255)
                                                                 ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                                 >  1:2017559/1‑100 (MQ=255)
                                                                 ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                                 <  1:3673315/100‑1 (MQ=255)
                                                                 ctcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                                 >  1:1248463/1‑100 (MQ=255)
                                                                  tcACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCCTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTg                                 <  2:706696/99‑1 (MQ=255)
                                                                   cACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCa                               >  1:2885435/1‑100 (MQ=255)
                                                                         taagaaaaaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTTCttatt                           >  2:2145808/9‑98 (MQ=21)
                                                                         aaGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaa                         <  2:1728706/100‑1 (MQ=255)
                                                                          aagaaaaaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaat                        >  1:1062442/8‑100 (MQ=25)
                                                                           ggggACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaata                       <  2:2751533/100‑1 (MQ=255)
                                                                            gggACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaatat                      >  2:1113483/1‑100 (MQ=255)
                                                                             ggACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCatattaatatt                     >  1:2891241/1‑100 (MQ=255)
                                                                               aaaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAg                   >  2:2418574/3‑100 (MQ=38)
                                                                                cAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGc                  <  2:12810/100‑1 (MQ=255)
                                                                                cAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGc                  >  1:3439871/1‑100 (MQ=255)
                                                                                aaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGc                  >  2:1291983/2‑100 (MQ=38)
                                                                                aaGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGc                  >  2:43317/2‑100 (MQ=38)
                                                                                 aGGTAATTCCGCCATCGCGGAGTTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTTCttatttatattacat                 >  2:1679710/1‑97 (MQ=37)
                                                                                  ggTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCtt                >  1:2149929/1‑100 (MQ=255)
                                                                                  ggTAACTCCGCGATGGCGGAATTACCTTTTTCTTATATCAGCGCGCCTGGTGAGAAGAAAACCACCATTGCGCCGGTTTTTTGCATATTCATATTAgat                 >  2:3612485/1‑97 (MQ=255)
                                                                                   gTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTg               <  1:221062/100‑1 (MQ=255)
                                                                                   gTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTg               <  2:1557988/100‑1 (MQ=255)
                                                                                      aCTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTc            <  1:2119523/100‑1 (MQ=255)
                                                                                      aCTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTc            <  1:2373450/100‑1 (MQ=255)
                                                                                       cTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTTGCTTGTTCa           >  1:1889821/1‑100 (MQ=255)
                                                                                       cTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCa           >  1:3084440/1‑100 (MQ=255)
                                                                                        tCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCa           >  2:1356357/1‑99 (MQ=255)
                                                                                          cgcgATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATg        >  1:84860/1‑100 (MQ=255)
                                                                                           gcgATGGCGGAATTACCTTTTTTTTTTTTTTTTCCGCCGGGGGAGACGAAATCAACAATTGCGCGGGTTTTTTGCATATTATTATTAGCTTGTTCa           >  2:311256/1‑96 (MQ=255)
                                                                                             gATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTg     >  1:2677662/1‑100 (MQ=255)
                                                                                              aTGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGa    <  2:60140/100‑1 (MQ=255)
                                                                                                ggCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTg     >  2:1745984/1‑97 (MQ=255)
                                                                                                ggCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGc  <  2:269172/100‑1 (MQ=255)
                                                                                                |                                                                                                   
GTTGACAACATTAAGCCCACGAGTGTGCCGCTGAAATATTTCAGATATTTATTCATAATAATGTTCTCACGGTAAGGGGACAGGTAACTCCGCGATGGCGGAATTACCTTTTTCTTATTTCAGCGCGCCTGGTGAGAAGAAATCAACAATTGCGCCGGTTTTTTGCATATTAATATTAGCTTGTTCAATGTTGAGC  >  NC_000913/4311987‑4312182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: