Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,303,657 T→A 15.6% I253I (ATT→ATA oppB → oligopeptide ABC transporter permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,303,6570TA15.6% 388.9 / 56.3 152I253I (ATT→ATAoppBoligopeptide ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base T (57/71);  new base A (10/14);  total (67/85)
Fisher's exact test for biased strand distribution p-value = 8.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.04e-01

Only 100 of 156 total aligned reads displayed.

TTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACC  >  NC_000913/1303559‑1303756
                                                                                                  |                                                                                                   
       aCGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGttt                                                                                             >  2:793827/1‑100 (MQ=255)
        cGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAATCATTTATGGttgg                                                                                            <  1:2594141/100‑3 (MQ=255)
        cGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTg                                                                                            >  1:2729193/1‑100 (MQ=255)
         gCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGc                                                                                           <  2:240386/100‑1 (MQ=255)
         gCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGc                                                                                           <  1:913155/100‑1 (MQ=255)
         gCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGc                                                                                           <  2:242746/100‑1 (MQ=255)
         gCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcg                                                                                           <  2:1611014/100‑3 (MQ=255)
          cATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGcc                                                                                          >  2:1698487/1‑100 (MQ=255)
          cATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcga                                                                                          <  1:1619174/100‑4 (MQ=255)
          cATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcga                                                                                          <  1:2312372/100‑4 (MQ=255)
          cATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcga                                                                                          <  2:106322/100‑4 (MQ=255)
          cATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcga                                                                                          <  1:843770/100‑4 (MQ=255)
           aTTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCg                                                                                         <  1:2485328/100‑1 (MQ=255)
           aTTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTAGCCg                                                                                         <  2:2474072/100‑1 (MQ=255)
           aTTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcgat                                                                                         <  1:3620639/100‑5 (MQ=255)
           aTTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTAACGGTTCTATGGTTATCGAAACCATAAATGGtttcgat                                                                                         <  2:2774922/100‑5 (MQ=255)
            ttAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcgata                                                                                        <  1:2450977/100‑6 (MQ=255)
            ttAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcgata                                                                                        <  1:2193900/100‑6 (MQ=255)
             tAAAACCTGTTCTGTTACTCGTTGTCTCTTATGTATGCCGAGCATTTGTCGTCATTATTACCGGTTCTAGTGTTATCGAAACCATAAATGGtttcgata                                                                                        <  2:1259284/99‑6 (MQ=255)
             tAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCggn                                                                                       <  2:1832401/100‑2 (MQ=255)
             tAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCggg                                                                                       <  1:133706/100‑1 (MQ=255)
              aaaaCCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCgggg                                                                                      <  1:323862/100‑1 (MQ=255)
              aaaaCCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCgggg                                                                                      <  1:2815036/100‑1 (MQ=255)
              aaaaCCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCgggg                                                                                      <  2:682290/100‑1 (MQ=255)
               aaaCCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGa                                                                                     >  1:638515/1‑100 (MQ=255)
               aaaCCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGa                                                                                     <  2:958961/100‑1 (MQ=255)
               aaaCCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGa                                                                                     <  1:1506973/100‑1 (MQ=255)
                aaCCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATAAATGGtttcgataacca                                                                                    <  1:2771226/100‑10 (MQ=255)
                 aCCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAtt                                                                                   >  1:1471198/1‑100 (MQ=255)
                  ccTGCTCTGTTACCCGTTCTCTCTCATATGGGCCCCGCCTTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAt                                                                                    <  2:1499625/98‑1 (MQ=255)
                  ccTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTg                                                                                  >  1:3460163/1‑100 (MQ=255)
                   cTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTgg                                                                                 <  1:2098540/100‑1 (MQ=255)
                    tGCTCTGTTACCCGTGTTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTgg                                                                                 <  2:2738038/99‑1 (MQ=255)
                    tGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGa                                                                                <  1:2029755/100‑1 (MQ=255)
                      ctctGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACa                                                                              >  2:3003390/1‑100 (MQ=255)
                        ctGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTGCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAAc                                                                            <  2:2059900/100‑1 (MQ=255)
                         tGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACt                                                                           <  1:3345161/100‑1 (MQ=255)
                         tGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACt                                                                           <  2:1748673/100‑1 (MQ=255)
                         tGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACt                                                                           >  2:2521659/1‑100 (MQ=255)
                         tGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACt                                                                           >  2:3346262/1‑100 (MQ=255)
                          gTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTg                                                                          <  2:1690837/100‑1 (MQ=255)
                           ttACCCGTGCTCTTTGATATGGGCCTCGCAGTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAAc                                                                            <  1:3328507/97‑1 (MQ=255)
                            tACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGtt                                                                        <  2:2783336/100‑1 (MQ=255)
                              cccGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCg                                                                      <  1:3768766/100‑1 (MQ=255)
                              cccGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCg                                                                      <  2:3718888/100‑1 (MQ=255)
                               ccGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGt                                                                     <  2:1905941/100‑1 (MQ=255)
                                cGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGtt                                                                    <  1:1044483/100‑1 (MQ=255)
                                cGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGtt                                                                    <  1:412445/100‑1 (MQ=255)
                                   gCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAAt                                                                 >  1:2441360/1‑100 (MQ=255)
                                     tctctTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATgg                                                               <  1:2311333/100‑1 (MQ=255)
                                      ctctTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGgc                                                              >  1:3392207/1‑100 (MQ=255)
                                      ctctTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGgc                                                              >  2:3195246/1‑100 (MQ=255)
                                         ttATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCa                                                           <  1:3195270/100‑1 (MQ=255)
                                          tataTGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCAt                                                          >  2:721419/1‑100 (MQ=255)
                                             atGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGa                                                       <  1:2411927/100‑1 (MQ=255)
                                              tGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGaa                                                      >  2:273895/1‑100 (MQ=255)
                                               gggCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAAc                                                     >  1:286191/1‑100 (MQ=255)
                                                ggCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAAcc                                                    >  2:2209513/1‑100 (MQ=255)
                                                ggCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAAcc                                                    <  1:740032/100‑1 (MQ=255)
                                                    ccGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGa                                                >  1:3581/1‑100 (MQ=255)
                                                    ccGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGa                                                >  1:1776998/1‑100 (MQ=255)
                                                    ccGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGa                                                <  1:1854322/100‑1 (MQ=255)
                                                     cGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGAc                                               <  2:3085407/100‑1 (MQ=255)
                                                           tGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTcc                                         >  2:1731117/1‑100 (MQ=255)
                                                             tCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCtt                                       <  2:745423/100‑1 (MQ=255)
                                                               ggCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAg                                     >  1:665447/1‑100 (MQ=255)
                                                                 cATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAgtg                                   >  1:2030844/1‑100 (MQ=255)
                                                                   ttattaCCGGTTCGATGGTCATCGAAACCATTTATGGTTTACCGGGGATTGGGCAATTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAgtgt                                  <  2:3667950/99‑1 (MQ=255)
                                                                     attaCCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTaa                               >  1:1031055/1‑100 (MQ=255)
                                                                     attaCCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTaa                               <  1:1924989/100‑1 (MQ=255)
                                                                      ttaCCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAg                              <  1:3792960/100‑1 (MQ=255)
                                                                      ttaCCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAg                              >  1:982989/1‑100 (MQ=255)
                                                                        aCCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGcc                            <  1:3102495/100‑1 (MQ=255)
                                                                          cGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTg                          >  2:3312910/1‑100 (MQ=255)
                                                                           ggTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGa                         >  2:881596/1‑100 (MQ=255)
                                                                           ggTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGa                         <  1:1731127/100‑1 (MQ=255)
                                                                           ggTTCTATGGTTATCGAAAACATTTATGGTTTGCCGGGGATTGGAAAACTGTTCGTTAATGGCGCATTGAACCGTGAATATTCCTTAGTGTTAAGCCTGa                         >  1:747204/1‑100 (MQ=255)
                                                                            gTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGAc                        <  1:1272775/100‑1 (MQ=255)
                                                                             ttCTATGGTTATCGAAAACATTTATGGTTTGCCGGGGATTGGATAACTGTTCGTGAATGGCGCATTGAACCGGGACTATTCCTTAGTGTTAAGCCTGAc                        <  1:531452/99‑1 (MQ=255)
                                                                              tCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCa                      >  1:3291664/1‑100 (MQ=255)
                                                                              tCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCa                      <  1:1785130/100‑1 (MQ=255)
                                                                                 aTGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATcc                   <  2:1391467/100‑1 (MQ=255)
                                                                                  tGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTTACCATCCt                  >  2:3735859/1‑100 (MQ=255)
                                                                                  tGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCt                  >  1:2390601/1‑100 (MQ=255)
                                                                                    ccccggcaaaCCATAAATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCtgg                >  1:97492/8‑100 (MQ=255)
                                                                                     cccggcaaaCCATAAATGGTTTGCCGGGGATTGGACACCTGTTCGTTAACGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCt                  >  2:1889591/7‑97 (MQ=255)
                                                                                      ccggcaaaCCATAAATGGTTTGCCGGGGATTGGACAACTGTTCCTTAATGGCACATTGAACCTTGACTATACCTTAATGTTAAGCCTGACCATCCtggtt              >  1:2132699/6‑100 (MQ=255)
                                                                                       cggcaaaCCATAAATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATGCCTTAGTGTTAAGCCTGACCATCCtggttg             >  2:3587018/5‑100 (MQ=255)
                                                                                        ggcaaaCCATAAATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCtggttgg            >  1:3744114/4‑100 (MQ=255)
                                                                                        ggcaaaCCATAAATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCtggttgg            >  1:3771090/4‑100 (MQ=255)
                                                                                         cGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCtggttggt           >  1:3528471/1‑100 (MQ=255)
                                                                                          gAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTg          <  2:2159097/100‑1 (MQ=255)
                                                                                          gAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTg          >  1:3027374/1‑100 (MQ=255)
                                                                                          gAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTg          >  1:37309/1‑100 (MQ=255)
                                                                                           aaaCCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGc         >  2:2344245/1‑100 (MQ=255)
                                                                                           aaaCCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGc         <  2:3823197/100‑1 (MQ=255)
                                                                                            aaCCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCt        <  1:1931777/100‑1 (MQ=255)
                                                                                              ccATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCttt      >  1:2679991/1‑100 (MQ=255)
                                                                                                aTTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTaa    >  2:2164581/1‑100 (MQ=255)
                                                                                                  ttATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAAcc  <  2:759476/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
TTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACC  >  NC_000913/1303559‑1303756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: