New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4093097151 (1.290)31 (0.280) 22/186 7.5 17.7% intergenic (‑274/+27) frvA/rhaM putative enzyme IIA component of PTS/L‑rhamnose mutarotase
?NC_000913 = 4093109 146 (1.330)intergenic (‑286/+15) frvA/rhaM putative enzyme IIA component of PTS/L‑rhamnose mutarotase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

TATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4092994‑4093097
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgccAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAGTAAAT  <  NC_000913/4093109‑4093011
                                                                                                                                                                                                           
TATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTG                                                                                                         <  1:1057769/100‑1
TATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTG                                                                                                         <  2:1245957/100‑1
TATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTG                                                                                                         >  1:2843818/1‑100
TATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTG                                                                                                         <  2:304992/100‑1
TATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTG                                                                                                         <  1:2808007/100‑1
TATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTG                                                                                                         <  1:790412/100‑1
 ATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGT                                                                                                        >  1:373127/1‑100
 ATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGT                                                                                                        >  2:2265660/1‑100
  TTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTG                                                                                                       <  1:182145/100‑1
   TCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTACTATGTTTAATTTTTCAAATCGAAATTTCAAATATTGTG                                                                                                       >  2:2603543/1‑99
   TCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGC                                                                                                      <  2:1503650/100‑1
   TCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGC                                                                                                      <  1:1924249/100‑1
   TCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTG                                                                                                       <  2:2420280/99‑1
    CATTATTTTTTTTTTTTTTTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTtt                                                                                                        >  1:2804862/1‑95
    CATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCC                                                                                                     >  2:1788709/1‑100
    CATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCC                                                                                                     >  2:1082170/1‑100
    CATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGC                                                                                                      >  1:2796891/1‑99
    CATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGC                                                                                                      >  1:428452/1‑99
     ATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATTACTTACCGGGAGATGTAATATGTTTAATTTTTCATATCGAAATTTAAAATATTGTG                                                                                                       >  1:2738993/1‑97
                GATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCC                                                                                         <  1:217479/100‑1
                 ATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCG                                                                                        <  2:2736254/100‑1
                    TACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCA                                                                                     <  1:322793/100‑1
                     ACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCAC                                                                                    <  1:2058939/100‑1
                      CTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACA                                                                                   <  2:2175945/100‑1
                       TCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAA                                                                                  >  1:2139470/1‑100
                       TCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAA                                                                                  <  2:1593543/100‑1
                        CACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAAT                                                                                 <  2:1638098/100‑1
                        CACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAAT                                                                                 <  1:1480835/100‑1
                        CACAATGAATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAGTTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCAC                                                                                    <  1:563866/97‑1
                          CAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATAT                                                                               <  2:1354666/100‑1
                          CAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATAT                                                                               <  2:2502641/100‑1
                          CAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATAT                                                                               <  2:2503410/100‑1
                            ATGTATCAGGGAAATATAACTTACCGTGAGATGTAATATGTTTCATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTT                                                                             <  1:580268/100‑1
                            ATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTT                                                                             <  1:105270/100‑1
                             TGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTT                                                                            <  1:140675/100‑1
                              GTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTA                                                                           <  2:1249052/100‑1
                               TATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAA                                                                          <  1:2175901/100‑1
                               TATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAA                                                                          <  2:501994/100‑1
                                 TCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAAT                                                                        <  2:867556/100‑1
                                  CAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATAATGTGCCAGAGATGCCTCCGGCACAATATTTTAAATT                                                                       >  1:733585/1‑100
                                    GGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTC                                                                     <  2:844614/100‑1
                                    GGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTC                                                                     <  2:489662/100‑1
                                       AAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGAT                                                                  <  2:2139497/100‑1
                                          TATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTG                                                               <  1:726081/100‑1
                                          TATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTG                                                               <  2:796419/100‑1
                                             AACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAA                                                            <  2:203548/100‑1
                                                    CGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAA                                                     <  2:621542/100‑1
                                                    CGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATAATGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAA                                                     <  2:733590/100‑1
                                                                 ATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTC                                        <  1:1788683/100‑1
                                                                          TTTTCAAATCGAAATTTAAAATATTGTGCCAGAGATGCCTCTGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGT                               <  2:1254123/100‑1
                                                                                                  TGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAG       <  2:2599712/100‑1
                                                                                                  TGTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAG       <  1:238188/100‑1
                                                                                                   GTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAGT      >  1:165857/1‑100
                                                                                                   GTGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAG       <  1:1004502/99‑1
                                                                                                    TGCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATATATTGTGAGTA     <  1:2053344/100‑1
                                                                                                     GCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAGTga    >  1:1756233/1‑98
                                                                                                     GCCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAGTAA    >  1:62651/1‑100
                                                                                                     GCCAGAGATGCCTCCGGCACAATATTTTAAATTACGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACGTTGTGAGTAA    >  1:1900875/1‑100
                                                                                                      CCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAGTAAA   >  1:1190714/1‑100
                                                                                                      CCAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAGTAAA   <  1:2059531/100‑1
                                                                                                       CAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAGTAAAT  <  1:459085/100‑1
                                                                                                                                                                                                           
TATTCATTATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAACTTACCGGGAGATGTAATATGTTTAATTTTTCAAATCGAAATTTAAAATATTGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4092994‑4093097
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgccAGAGATGCCTCCGGCACAATATTTTAAATTTCGATTTGAAAAATTAAACATATTACATCTCCCGGTAAGTTATATTTCCCTGATACATTGTGAGTAAAT  <  NC_000913/4093109‑4093011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.