| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,978 | 0 | A | C | 29.0% | 427.3 / 220.1 | 250 | intergenic (‑188/+120) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base A (81/73); new base C (61/2); total (174/76) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.39e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-02 | |||||||||||
Only 100 of 253 total aligned reads displayed.
AAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705880‑3706077 | aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc < 2:44227/100‑1 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg > 2:2550350/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 2:1493413/100‑1 (MQ=255) tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:697337/1‑100 (MQ=255) gctgcCGGATGGCGCTGTACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:188146/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2113128/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:375634/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 1:647037/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:2580463/100‑1 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:274287/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:826200/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa > 2:1759176/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt > 2:500818/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:751267/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt < 2:2544342/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:1131946/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:2676904/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:838300/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:1787987/1‑100 (MQ=255) cacaGCCCCACCGGGTATACAGATTGTTGACACAGTGCGCTCTGTCTATGCGCGACGCGGCGCCAACGCCTTATCCGGCCTCC‑AAAATCGTCCacctcca > 1:2752803/1‑94 (MQ=12) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt > 1:711328/1‑100 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 1:1582320/1‑100 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAg > 2:1563735/1‑100 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGa > 2:1800017/1‑100 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGa > 1:2857568/1‑100 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGa > 1:1664997/1‑100 (MQ=255) taCAGATTGCTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑At‑t‑tt > 1:1395319/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTc < 2:2166261/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑g < 1:451959/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑g < 2:2860928/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTGATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑g < 2:1683035/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑Gt > 1:2092942/1‑100 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAg < 1:1022406/100‑1 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAgg < 1:2369293/100‑1 (MQ=255) cataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGc > 2:1263416/6‑100 (MQ=18) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGcc > 2:812691/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGcc < 1:2213964/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGa > 2:1057557/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCg > 2:1306295/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCgg < 1:225885/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAg < 2:730320/100‑1 (MQ=255) gaatttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑AT‑CCCTT‑‑GTAGGCCTGATAAGCGTAgcgc > 2:1092872/11‑100 (MQ=18) cTTTGTTTATGCCGGAGGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgcg < 2:626922/100‑1 (MQ=255) attttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgcgc > 2:2901299/10‑100 (MQ=18) ttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑A‑AT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCa > 2:1747108/9‑100 (MQ=18) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAGG‑GA‑C‑TAT‑‑GTAGGCCTGATAAGCATAGCGCAt > 2:543247/8‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑A‑TA‑T‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:2105223/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAGG‑GA‑C‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATc > 2:1374947/7‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:457510/1‑100 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGC‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:1220173/1‑100 (MQ=255) gatctGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:731614/96‑1 (MQ=255) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTACAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:1546220/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:2697775/5‑99 (MQ=17) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:300596/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACC‑AT‑C‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2449185/4‑100 (MQ=21) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:22551/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa < 2:2130947/100‑1 (MQ=255) ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTGCAGA‑GA‑T‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1986094/2‑100 (MQ=14) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAGG‑AC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1443462/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACC‑AT‑C‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:471291/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCAAT‑CT‑C‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCANCAGGCa > 2:2587315/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑A‑AT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1463250/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAGG‑AA‑A‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCa > 1:894326/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAGAGAT‑T‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2500614/2‑100 (MQ=17) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:1083590/1‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAGA‑AA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1624403/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATG‑GG‑C‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:236359/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑A‑TA‑T‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 2:2783841/1‑97 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCATG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1270798/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCG‑AT‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:166973/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCACC‑AT‑C‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:2396106/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCAGG‑AT‑A‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:2205404/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCAGG‑AT‑A‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:785572/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:2454157/1‑100 (MQ=21) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:1707809/9‑100 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGATCG‑AT‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1428842/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:1961772/9‑100 (MQ=21) ccggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGTGGAGCGCATCAGGCAtt > 2:1232612/9‑100 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 2:876643/100‑1 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCAGA‑AA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:2343011/1‑98 (MQ=18) cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:2028565/8‑99 (MQ=18) cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAGA‑GT‑T‑CAC‑‑GTAGGACTGATAAGCGTAGCGCATCAGGCAgtt > 1:5191/8‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:2236084/7‑98 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCAAT‑CT‑T‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaagct > 1:1464106/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAGG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGTGCATCAGGCAtttat > 2:1862266/7‑98 (MQ=21) gatctggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 2:2704302/95‑1 (MQ=18) gataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCATG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 1:1142236/6‑100 (MQ=17) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 2:369744/100‑1 (MQ=255) ataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTGCAGA‑GA‑T‑GGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCATTtttg < 1:383830/96‑1 (MQ=11) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCGTCAGGCATTtttg < 1:1799991/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1103607/100‑1 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2099407/1‑100 (MQ=255) gcggcgTTAACGCCTTATCCGGTCTAC‑AAAATCGTGCAAATTCAATACAGTGCAGA‑AT‑T‑TTC‑‑GTAGGAATGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:2471634/100‑1 (MQ=18) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:1872371/1‑100 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2667617/100‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:825230/100‑1 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1665023/100‑1 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc > 1:1517684/1‑100 (MQ=255) tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:683596/1‑100 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:1721843/1‑100 (MQ=255) | AAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAGA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705880‑3706077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |