BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,706,048	0	G	T	34.8%	463.2 / 282.2	265	intergenic (‑258/+50)	dppB/dppA	dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
Reads supporting (aligned to +/- strand): ref base G (82/87); new base T (87/3); total (175/90)
Fisher's exact test for biased strand distribution p-value = 2.69e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01

Only 100 of 271 total aligned reads displayed.

TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACC  >  NC_000913/3705949‑3706146

tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCgg                                                                                                    <  1:225885/100‑1 (MQ=255)

    gaatttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑AT‑CCCTT‑‑GTAGGCCTGATAAGCGTAgcgc                                                                                               >  2:1092872/11‑100 (MQ=18)

    cTTTGTTTATGCCGGAGGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgcg                                                                                                <  2:626922/100‑1 (MQ=255)

     attttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAgcgc                                                                                               >  1:1707567/10‑100 (MQ=17)

     attttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAgcgc                                                                                               >  2:2901299/10‑100 (MQ=18)

      atttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCAt                                                                                             >  2:1615108/9‑100 (MQ=18)

       tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCA‑GG‑GA‑C‑TAT‑‑GTAGGCCTGATAAGCATAGCGCAt                                                                                             >  2:543247/8‑100 (MQ=18)

        ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑A‑TA‑T‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCa                                                                                           >  2:2105223/7‑100 (MQ=18)

         tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GC‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa                                                                                           >  1:1220173/1‑100 (MQ=255)

          ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTACA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg                                                                                          <  1:1546220/100‑1 (MQ=255)

           taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg                                                                                         >  1:1718905/4‑100 (MQ=17)

            aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                        >  2:2697273/3‑100 (MQ=18)

            aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc                                                                                        >  1:1821833/1‑100 (MQ=255)

            aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc                                                                                        >  2:512177/1‑100 (MQ=255)

             tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa                                                                                       >  2:22551/1‑100 (MQ=255)

             tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa                                                                                       <  2:2130947/100‑1 (MQ=255)

             ggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCA‑GA‑AA‑T‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                       >  2:1770372/2‑100 (MQ=18)

             ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt                                                                                      >  2:2196595/2‑100 (MQ=18)

             ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                       >  2:2209020/2‑100 (MQ=17)

             ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                       >  2:1443462/2‑100 (MQ=18)

             ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑A‑AT‑C‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                       >  2:1463250/2‑100 (MQ=18)

             ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑A‑CAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCa                                                                                       >  1:787710/2‑100 (MQ=18)

             ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GG‑AT‑A‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                       >  1:2150935/2‑100 (MQ=18)

             ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑T‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                       >  1:1344500/2‑100 (MQ=17)

             ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑T‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                       >  2:2580175/2‑100 (MQ=17)

             ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑T‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                       >  1:2500614/2‑100 (MQ=17)

              gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCaagatc                                                                                      >  2:731619/1‑95 (MQ=255)

              gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCC‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt                                                                                     >  1:1083590/1‑100 (MQ=18)

              gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑A‑TA‑T‑GAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcgat                                                                                     >  2:2783841/1‑97 (MQ=21)

              gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CG‑AT‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag                                                                                      >  1:166973/1‑99 (MQ=21)

               ccggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt                                                                                    >  1:1961772/9‑100 (MQ=21)

               ccggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGTGGAGCGCATCAGGCAtt                                                                                     >  2:1232612/9‑100 (MQ=18)

               ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt                                                                                     >  1:2412885/1‑100 (MQ=255)

               ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt                                                                                     >  2:1078306/1‑100 (MQ=255)

               ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt                                                                                     >  2:2314444/1‑100 (MQ=255)

               ccGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt                                                                                     >  2:2343011/1‑98 (MQ=18)

               ccGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt                                                                                      >  2:2079237/1‑99 (MQ=17)

                cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CAC‑‑GTAGGACTGATAAGCGTAGCGCATCAGGCAgtt                                                                                    >  1:5191/8‑100 (MQ=17)

                cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt                                                                                    >  2:2700806/8‑100 (MQ=17)

                 ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCA‑AT‑CT‑T‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaagct                                                                                   >  1:1464106/7‑96 (MQ=21)

                 ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt                                                                                   >  1:2088474/7‑100 (MQ=17)

                 ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGAT‑C‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt                                                                                   >  2:2415926/7‑100 (MQ=17)

                 ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑T‑TAT‑‑GTAGGCCTGATAAGCGTAGTGCATCAGGCAtttat                                                                                  >  2:1862266/7‑98 (MQ=21)

                 ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCA‑GG‑AA‑C‑GAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta                                                                                   >  1:2770032/7‑96 (MQ=25)

                  gataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt                                                                                  >  2:309120/6‑100 (MQ=18)

                  gataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AG‑C‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt                                                                                  >  1:1142236/6‑100 (MQ=17)

                  gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt                                                                                  <  2:369744/100‑1 (MQ=255)

                   ataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑T‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttg                                                                                 <  2:382742/96‑1 (MQ=17)

                   ataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTGCA‑GA‑GA‑T‑GGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCATTtttg                                                                                 <  1:383830/96‑1 (MQ=11)

                   aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCGTCAGGCATTtttg                                                                                 <  1:1799991/100‑1 (MQ=255)

                   aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg                                                                                 <  1:697331/100‑1 (MQ=255)

                   aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg                                                                                 <  1:1103607/100‑1 (MQ=255)

                     gcggcgTTAACGCCTTATCCGGTCTAC‑AAAATCGTGCAAATTCAATACAGTGCA‑GA‑AT‑T‑TTC‑‑GTAGGAATGATAAGCGGAGCGCATCAGGCATTtttgcc                                                                               <  2:2471634/100‑1 (MQ=18)

                     gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc                                                                               <  1:2367093/100‑1 (MQ=255)

                     aaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑C‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgcg                                                                               >  1:93054/3‑99 (MQ=18)

                      cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct                                                                              >  1:1872371/1‑100 (MQ=255)

                       ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt                                                                             >  2:455464/1‑100 (MQ=255)

                       ggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttttagatc                                                                             >  1:2704266/1‑95 (MQ=18)

                         cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg                                                                           <  1:825230/100‑1 (MQ=255)

                          gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc                                                                          <  2:1665023/100‑1 (MQ=255)

                           ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc                                                                         >  1:1517684/1‑100 (MQ=255)

                                gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg                                                                    <  2:1594445/100‑1 (MQ=255)

                                     aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg                                                               <  2:711334/100‑1 (MQ=255)

                                     aTCCGGCATAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGACCTGATAAGAAGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt                                                                >  1:33241/1‑99 (MQ=25)

                                            cTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCt                                                        <  1:495858/100‑1 (MQ=255)

                                            cTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCt                                                        >  2:1993701/1‑100 (MQ=255)

                                            cTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCt                                                        >  1:436188/1‑100 (MQ=255)

                                                   aaTCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat                                                  <  2:2560293/100‑1 (MQ=255)

                                                     tCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAatta                                                <  2:2610222/100‑1 (MQ=255)

                                                        tGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc                                             <  1:2291133/100‑1 (MQ=255)

                                                         gCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg                                            >  2:887178/1‑100 (MQ=255)

                                                          cAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa                                           >  1:1057017/1‑100 (MQ=255)

                                                          cAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGa                                           >  1:2311927/1‑100 (MQ=255)

                                                            aaTTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATa                                         >  1:1406994/1‑100 (MQ=255)

                                                               tCAATACATTGCA‑GA‑TT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATagag                                      <  2:2857606/100‑1 (MQ=255)

                                                                        tGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCg                             <  1:1131928/100‑1 (MQ=255)

                                                                         gCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa                            >  2:1159336/1‑100 (MQ=255)

                                                                         gCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa                            >  2:2720335/1‑100 (MQ=255)

                                                                           a‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg                          <  1:1893204/100‑1 (MQ=255)

                                                                           a‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg                          <  1:375629/100‑1 (MQ=255)

                                                                           a‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAg                          <  1:750771/100‑1 (MQ=255)

                                                                              a‑aT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg                        >  1:2603784/1‑100 (MQ=255)

                                                                              a‑aT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg                        <  1:455459/100‑1 (MQ=255)

                                                                                aT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGa                       >  2:19558/1‑100 (MQ=255)

                                                                                   t‑ttC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTGTGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATg                     <  2:858903/100‑1 (MQ=255)

                                                                                          gTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTCCCATCAGTCTTGTATGGCTATTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTg                 >  1:1581840/1‑100 (MQ=255)

                                                                                             ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCt              >  2:2836210/1‑100 (MQ=255)

                                                                                             ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCt              >  2:1205756/1‑100 (MQ=255)

                                                                                             ggCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCt              <  1:1753077/100‑1 (MQ=255)

                                                                                                cTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAAt           <  2:1517708/100‑1 (MQ=255)

                                                                                                 tGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATg          <  1:632463/100‑1 (MQ=255)

                                                                                                 tGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATg          <  2:1703100/100‑1 (MQ=255)

                                                                                                   aTAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGa        >  2:1306894/1‑100 (MQ=255)

                                                                                                      aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa     <  1:1449093/100‑1 (MQ=255)

                                                                                                      aGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCa     >  1:462385/1‑100 (MQ=255)

                                                                                                       gCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCaa    >  2:2010280/1‑100 (MQ=255)

                                                                                                        cGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAc   <  2:2092970/100‑1 (MQ=255)

                                                                                                        cGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAc   <  2:1821859/100‑1 (MQ=255)

                                                                                                         ggAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAcc  <  2:1387191/100‑1 (MQ=255)

                                                                                                         ggAGCGCATCAGGCATTTTTGCCTTTGCAATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAAcc  <  1:806228/100‑1 (MQ=255)

TGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑T‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACC  >  NC_000913/3705949‑3706146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`