Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,273,2290AT23.0% 230.0 / 71.4 113intergenic (+27/+17)chaC/ychNcation transport regulator/putative sulfur relay protein
Reads supporting (aligned to +/- strand):  ref base A (41/46);  new base T (13/13);  total (54/59)
Fisher's exact test for biased strand distribution p-value = 8.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01

Only 100 of 113 total aligned reads displayed.

GCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAG  >  NC_000913/1273133‑1273326
                                                                                                |                                                                                                 
gCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGAc                                                                                                >  2:1343436/1‑100 (MQ=255)
   ggTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGcc                                                                                             >  2:2605758/1‑100 (MQ=255)
      aTCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGGGTAAACTTCCCGCATAGTGGGGCGTCTGACGcccc                                                                                           <  1:2521803/99‑1 (MQ=255)
      aTCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGccccc                                                                                          <  1:268615/100‑1 (MQ=255)
      aTCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGccccc                                                                                          <  1:511211/100‑1 (MQ=255)
       tCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccac                                                                                         <  1:704713/100‑3 (MQ=255)
       tCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccac                                                                                         <  2:1991448/100‑3 (MQ=255)
       tCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGAATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccac                                                                                         <  2:2079509/100‑3 (MQ=255)
        cGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccact                                                                                        <  2:229400/100‑4 (MQ=255)
        cGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccac                                                                                         <  1:1214396/99‑3 (MQ=255)
         ggTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTc                                                                                        <  1:1434688/99‑1 (MQ=255)
         ggTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCa                                                                                       >  1:1051104/1‑100 (MQ=255)
         ggTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCa                                                                                       >  1:351772/1‑100 (MQ=255)
         ggTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCa                                                                                       >  2:2063693/1‑100 (MQ=255)
          gcaaaaataCTGCTGGCGGAGAATTTTCCGGATGTTGTGTTACGTCCGGGATTCGCCTGAGTAAACTGCCCGCATAGTGGGGCGTCTGACGccccac                                                                                         <  1:2321027/95‑3 (MQ=255)
           tAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccactatg                                                                                     <  2:59003/100‑7 (MQ=255)
           tAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCaaa                                                                                     <  2:654934/100‑1 (MQ=255)
            aaaaaaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAAc                                                                                    >  1:1352803/1‑100 (MQ=255)
             aaaaaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccactatgcg                                                                                   <  2:656957/100‑9 (MQ=255)
              aaaaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccactatgcgg                                                                                  >  2:824108/1‑91 (MQ=39)
              aaaaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccactatgcgg                                                                                  <  2:1151414/100‑10 (MQ=39)
              aaaaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccactatgcgg                                                                                  <  2:1058689/100‑10 (MQ=39)
              aaaaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACAt                                                                                  >  2:491509/1‑100 (MQ=255)
               aaaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCTGACGccccactatgcggg                                                                                 <  1:824102/100‑11 (MQ=38)
                aaaCTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTa                                                                                <  1:2566390/100‑1 (MQ=255)
                   ctgctgGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTaaaa                                                                             <  2:2189631/100‑1 (MQ=255)
                    tgctgGCGGAGAATTTTCCGGATGGTGTGTTACGGCCGGGATTCGCCTGAGTACACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTaaa                                                                              <  1:2686987/98‑1 (MQ=255)
                     gctgGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAAtg                                                                           >  2:2421252/1‑100 (MQ=255)
                        ggCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGa                                                                        >  2:316202/1‑100 (MQ=255)
                         gCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAg                                                                       <  1:1006238/100‑1 (MQ=255)
                         gCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAg                                                                       <  2:872964/100‑1 (MQ=255)
                         gCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAg                                                                       <  1:2107947/100‑1 (MQ=255)
                          cGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGc                                                                      >  1:443143/1‑100 (MQ=255)
                          cGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGc                                                                      <  1:2572840/100‑1 (MQ=255)
                            gagaATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCAc                                                                    <  1:376378/100‑1 (MQ=255)
                            gagaATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCAc                                                                    <  1:1345079/100‑1 (MQ=255)
                              naaTTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACtt                                                                  >  2:699375/2‑100 (MQ=255)
                                aTTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTa                                                                >  2:1449300/1‑100 (MQ=255)
                                  tttCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATc                                                              >  2:2500346/1‑100 (MQ=255)
                                     ctggATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGc                                                           <  1:1756194/98‑1 (MQ=255)
                                     ccGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGc                                                           <  2:1063107/100‑1 (MQ=255)
                                       ggATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTg                                                         <  1:2275015/100‑1 (MQ=255)
                                             tgtgtTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCg                                                   >  2:54433/1‑100 (MQ=255)
                                               tgtTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATTGGCTGACAGCGTc                                                 >  2:1106491/1‑100 (MQ=255)
                                               tgtTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGt                                                  <  1:1441932/99‑1 (MQ=255)
                                                gtTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTcc                                                >  2:2309797/1‑100 (MQ=255)
                                                gtTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTcc                                                >  2:1517027/1‑100 (MQ=255)
                                                  tACGTCCCGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCAt                                              <  1:1563371/100‑1 (MQ=255)
                                                   aCGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCAtt                                             <  1:2708861/100‑1 (MQ=255)
                                                    cgatctggATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTg                                            <  2:410528/94‑1 (MQ=255)
                                                     gTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgc                                           >  2:354080/1‑100 (MQ=255)
                                                      tCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgcg                                          <  2:2837191/100‑1 (MQ=255)
                                                      tCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgcg                                          <  1:181178/100‑1 (MQ=255)
                                                      tCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgcg                                          <  1:1419891/100‑1 (MQ=255)
                                                       ccGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgctc                                         <  2:1957823/100‑3 (MQ=255)
                                                       ccGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgcgc                                         >  1:1271720/1‑100 (MQ=255)
                                                        cGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGcc                                        >  1:2308233/1‑100 (MQ=255)
                                                        cGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGcc                                        >  2:1360984/1‑100 (MQ=255)
                                                        cGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGcc                                        <  2:2448209/100‑1 (MQ=255)
                                                        cGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGcc                                        <  1:1367990/100‑1 (MQ=255)
                                                        cGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGcc                                        <  2:1221606/100‑1 (MQ=255)
                                                          ggATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTgagatcg                                      >  1:410523/1‑94 (MQ=255)
                                                              tCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTcc                                  <  1:753602/100‑1 (MQ=255)
                                                               cGCCTGAGTAAACTTCCCGCATAGTGGGGTGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCca                                 >  1:869494/1‑100 (MQ=255)
                                                                 ccTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCcaca                               >  2:1282587/1‑100 (MQ=255)
                                                                    gAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAaga                            <  2:351776/100‑1 (MQ=255)
                                                                    gAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAAGGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAag                             <  2:1083267/99‑1 (MQ=255)
                                                                     aGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAagag                           <  1:1470852/100‑1 (MQ=255)
                                                                      gTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGt                          >  2:2286673/1‑100 (MQ=255)
                                                                      gTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGt                          >  2:362839/1‑100 (MQ=255)
                                                                        aaaCTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTAc                        >  2:1592379/1‑100 (MQ=255)
                                                                         aaCTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTAcc                       >  2:1827836/1‑100 (MQ=255)
                                                                           cTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGa                     >  1:497114/1‑100 (MQ=255)
                                                                               ccGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTc                 <  2:2185764/100‑1 (MQ=255)
                                                                               ccGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTc                 <  1:1343418/100‑1 (MQ=255)
                                                                               ccGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTc                 <  1:1343333/100‑1 (MQ=255)
                                                                               ccGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTc                 <  2:742898/100‑1 (MQ=255)
                                                                               ccGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTc                 >  2:1351632/1‑100 (MQ=255)
                                                                               atgtttgagggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTc                 >  2:2449228/10‑100 (MQ=39)
                                                                               atgtttgagggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTc                 >  2:2158287/10‑100 (MQ=39)
                                                                                cGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTcc                <  2:526950/100‑1 (MQ=255)
                                                                                 gtttgagggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGAACCGATTTCCa               >  2:1731864/8‑100 (MQ=255)
                                                                                 gCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCa               <  2:1690319/100‑1 (MQ=255)
                                                                                  tttgagggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCAc              >  1:2444597/7‑100 (MQ=255)
                                                                                   ttgagggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCAcc             >  2:253349/6‑100 (MQ=255)
                                                                                    tgagggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCAccc            >  2:2724381/5‑100 (MQ=255)
                                                                                    tAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCAccc            >  2:2076167/1‑100 (MQ=255)
                                                                                      gTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCa          <  1:1360966/100‑1 (MQ=255)
                                                                                      gTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGGCCATTGCGCCAGTTCCACAGGAGTACCGATTTCCACCCCa          >  1:2423109/1‑100 (MQ=255)
                                                                                      agggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCa          >  1:452520/3‑100 (MQ=255)
                                                                                      agggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCa          >  1:758661/3‑100 (MQ=255)
                                                                                       tGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCat         <  2:2663144/100‑1 (MQ=255)
                                                                                       gggggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCat         >  2:1962784/2‑100 (MQ=255)
                                                                                         gggCGTCTGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatca       >  1:2515510/1‑100 (MQ=255)
                                                                                           gCGTCACACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGACTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatcaat     <  1:627564/100‑1 (MQ=255)
                                                                                             gTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatcaatca   >  1:2272711/1‑100 (MQ=255)
                                                                                             gTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatcaatca   <  2:1854669/100‑1 (MQ=255)
                                                                                              tCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCag  <  1:886678/100‑1 (MQ=255)
                                                                                              tCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATCTCCACCCCATCAATCag  <  1:582343/100‑1 (MQ=255)
                                                                                              tCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACACCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCatcaacc    >  1:326281/1‑96 (MQ=255)
                                                                                                |                                                                                                 
GCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGGGGCGTCAGACGCCCCCTCAAACATTAAAATGTGAGCACTTTATCGGCTGACAGCGTCCATTGCGCCAGTTCCACAAGAGTACCGATTTCCACCCCATCAATCAG  >  NC_000913/1273133‑1273326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑