Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,225,764 T→C intergenic (‑133/‑37) yohC ← / → yohD Yip1 family inner membrane protein/DedA family inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,225,7640TC99.2% 438.2 / ‑4.7 124intergenic (‑133/‑37)yohC/yohDYip1 family inner membrane protein/DedA family inner membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (48/75);  total (48/76)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01

Only 100 of 124 total aligned reads displayed.

TCAAGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGTATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCGGTAGCCT  >  NC_000913/2225668‑2225859
                                                                                                |                                                                                               
tCAAGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATg                                                                                              <  2:1841628/100‑1 (MQ=255)
 cAAGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGc                                                                                             >  1:244902/1‑100 (MQ=255)
 cAAGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGc                                                                                             <  2:1265929/100‑1 (MQ=255)
 cAAGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGc                                                                                             >  1:2081918/1‑100 (MQ=255)
  aaGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCt                                                                                            <  1:1074733/100‑1 (MQ=255)
  aaGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCt                                                                                            <  2:673093/100‑1 (MQ=255)
   aGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCtt                                                                                           <  2:2363726/100‑1 (MQ=255)
   aGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCtt                                                                                           >  2:377864/1‑100 (MQ=255)
    gTATAAGTCAGCTTGTGATTATTTTTTGTTCGCTCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTa                                                                                          <  1:2006214/100‑1 (MQ=255)
    gTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTa                                                                                          <  1:2869419/100‑1 (MQ=255)
     tataAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGAAATTTTCACTGTCTGATGAACGTCCTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACt                                                                                        >  1:1556071/1‑100 (MQ=255)
       taAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTg                                                                                       <  1:735197/100‑1 (MQ=255)
       taAGTCAGCGTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTg                                                                                       >  1:2159242/1‑100 (MQ=255)
        aaGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTgg                                                                                      <  2:364286/100‑1 (MQ=255)
        aaGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTgg                                                                                      <  2:1767140/100‑1 (MQ=255)
         aGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGc                                                                                     >  2:768354/1‑100 (MQ=255)
         aGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGc                                                                                     >  1:564165/1‑100 (MQ=255)
          gTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCa                                                                                    <  2:398186/100‑1 (MQ=255)
            cAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAAc                                                                                  <  2:2731161/100‑1 (MQ=255)
             aGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAAcc                                                                                 <  2:1715208/100‑1 (MQ=255)
              gCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAAcc                                                                                 <  1:910264/99‑1 (MQ=255)
               cTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCaa                                                                               >  2:2055595/1‑100 (MQ=255)
                 tgtgATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCaaa                                                                              >  1:1782626/1‑99 (MQ=255)
                 tgtgATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAg                                                                             <  2:800947/100‑1 (MQ=255)
                  gtgATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTTACAGGGTGCATGCTTACTGGCAACCAAAgg                                                                            <  1:67044/100‑1 (MQ=255)
                   tgATTATTTTTTTTTTGTTTATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCaaa                                                                              >  1:1190854/1‑97 (MQ=255)
                    gATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACAAAAgg                                                                            >  1:1075550/1‑98 (MQ=255)
                     attattTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGTATGCTTACTGGCAACCAAAGGgag                                                                         <  2:1533119/100‑1 (MQ=255)
                     attattTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGgag                                                                         <  2:771370/100‑1 (MQ=255)
                       tattTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGagac                                                                       <  1:816577/100‑1 (MQ=255)
                         ttttttGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGagacag                                                                     <  1:714054/100‑1 (MQ=255)
                            tttGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACt                                                                  <  1:110625/100‑1 (MQ=255)
                             ttGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTg                                                                 <  1:1650980/100‑1 (MQ=255)
                             ttGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTg                                                                 <  1:1641020/100‑1 (MQ=255)
                                ttCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGcc                                                              <  1:1163793/100‑1 (MQ=255)
                                ttCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTGCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGcc                                                              <  2:1254823/100‑1 (MQ=255)
                                 tCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCt                                                             <  2:2081946/100‑1 (MQ=255)
                                  cGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTa                                                            >  2:1124166/1‑100 (MQ=255)
                                  cGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTa                                                            <  1:284868/100‑1 (MQ=255)
                                    cccATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATg                                                          >  1:1304592/1‑100 (MQ=255)
                                     ccATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATgg                                                         <  2:865457/100‑1 (MQ=255)
                                     ccATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATgg                                                         <  2:616689/100‑1 (MQ=255)
                                     ccATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATgg                                                         <  1:383442/100‑1 (MQ=255)
                                        tGTAATTTTCCCTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGAtc                                                      <  2:715328/100‑1 (MQ=255)
                                        tGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGAtc                                                      <  1:2265252/100‑1 (MQ=255)
                                        tGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGAtc                                                      <  1:2252773/100‑1 (MQ=255)
                                          tAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATTGAtctc                                                    <  1:959394/100‑1 (MQ=255)
                                          tAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGAtctc                                                    >  2:1154991/1‑100 (MQ=255)
                                          tAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGAtctc                                                    <  1:1504093/100‑1 (MQ=255)
                                           aaTTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCa                                                   >  1:2821206/1‑100 (MQ=255)
                                           aaTTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCa                                                   <  1:2703827/100‑1 (MQ=255)
                                           aaTTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCa                                                   <  1:14076/100‑1 (MQ=255)
                                            aTTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCaa                                                  >  2:445513/1‑100 (MQ=255)
                                             ttttCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTTAAt                                                 >  1:286925/1‑100 (MQ=255)
                                               ttCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATac                                               <  2:2118655/100‑1 (MQ=255)
                                               ttCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATac                                               <  2:109849/100‑1 (MQ=255)
                                                 cACTGTCTGATGAACGTCCTTTTTTTTCTTTTTTTATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATacac                                             >  1:860457/1‑100 (MQ=255)
                                                  aCTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACt                                            <  2:230822/100‑1 (MQ=255)
                                                  aCTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACt                                            <  2:744176/100‑1 (MQ=255)
                                                     gTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTAt                                         >  2:1098531/1‑100 (MQ=255)
                                                       cTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATTCACTTAtct                                       >  1:1837077/1‑100 (MQ=255)
                                                       cTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTAtct                                       >  1:1894862/1‑100 (MQ=255)
                                                       cTGATGAACGTCCCTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTAtct                                       <  1:1020077/100‑1 (MQ=255)
                                                        tgatgaACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTAtctc                                      >  1:1054435/1‑100 (MQ=255)
                                                         cttgaACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTca                                     <  1:1969470/98‑1 (MQ=255)
                                                          atgaACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTcac                                    <  2:1782652/100‑1 (MQ=255)
                                                            gaACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTcaca                                   >  1:2544131/1‑99 (MQ=255)
                                                            gaACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACaa                                  <  2:2383895/100‑1 (MQ=255)
                                                            gaACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACaa                                  <  2:1894888/100‑1 (MQ=255)
                                                             aaCGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAat                                 <  2:1903007/100‑1 (MQ=255)
                                                               cGTCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAatat                               >  2:1400085/1‑100 (MQ=255)
                                                                 tCCTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATgg                             <  1:1364420/100‑1 (MQ=255)
                                                                   cTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGtt                           <  2:222995/100‑1 (MQ=255)
                                                                   cTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGtt                           >  2:2802657/1‑100 (MQ=255)
                                                                   cTTTTTCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGtt                           >  1:2398585/1‑100 (MQ=255)
                                                                    tttttCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTa                          <  1:586509/100‑1 (MQ=255)
                                                                    tttttCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTa                          <  1:341349/100‑1 (MQ=255)
                                                                    tttttCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTa                          <  1:2723558/100‑1 (MQ=255)
                                                                     ttttCAGTGTGAATGATTCACAGGGTGCATCCTTACTGGCAAACAAAGGGATACAGACTGGCCTATGGATCTCAATTCTCCTATCTCACAATATGGTTAt                         <  1:2515017/100‑1 (MQ=255)
                                                                     ttttCAGCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTAt                         >  1:1824866/1‑100 (MQ=255)
                                                                           gCGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCcgcg                   >  1:2691521/1‑100 (MQ=255)
                                                                            cGTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCgcgc                  <  1:2071201/100‑1 (MQ=255)
                                                                             gTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCt                 <  2:573066/100‑1 (MQ=255)
                                                                             gTGAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCt                 <  1:2088865/100‑1 (MQ=255)
                                                                              tGAATGATTCATAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTg                >  2:1867596/1‑100 (MQ=255)
                                                                               gAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTgg               <  1:121224/100‑1 (MQ=255)
                                                                               gAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTgg               >  1:2840620/1‑100 (MQ=255)
                                                                               gAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTgg               <  1:1841602/100‑1 (MQ=255)
                                                                               gAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTgg               <  2:1391394/100‑1 (MQ=255)
                                                                               gAATGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTgg               >  1:2453510/1‑100 (MQ=255)
                                                                                 aTGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTg             >  1:2216409/1‑100 (MQ=255)
                                                                                 aTGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTg             <  1:1143681/100‑1 (MQ=255)
                                                                                 aTGATTCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTg             >  1:1097970/1‑100 (MQ=255)
                                                                                     ttCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCg         <  1:2055567/100‑1 (MQ=255)
                                                                                     ttCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCg         >  1:2268544/1‑100 (MQ=255)
                                                                                      tCACAGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCgg        <  2:2339633/100‑1 (MQ=255)
                                                                                        acaGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACCATATGGTTATGCCGCGCTGGCGATCGGTa      >  1:2831048/1‑100 (MQ=255)
                                                                                        acaGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCGGTa      <  2:2439294/100‑1 (MQ=255)
                                                                                        acaGGGTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCGGTa      >  1:1990363/1‑100 (MQ=255)
                                                                                           gggTGCATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCGGTAGcc   >  2:2135061/1‑100 (MQ=255)
                                                                                                |                                                                                               
TCAAGTATAAGTCAGCTTGTGATTATTTTTTGTTCGCCCATGTAATTTTCACTGTCTGATGAACGTCCTTTTTCAGCGTGAATGATTCACAGGGTGTATGCTTACTGGCAACCAAAGGGAGACAGACTGGCCTATGGATCTCAATACACTTATCTCACAATATGGTTATGCCGCGCTGGTGATCGGTAGCCT  >  NC_000913/2225668‑2225859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: