New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3898636	NA (NA)	12 (0.140)	8/162	NT	NA	noncoding (6/26 nt)	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 3898650	NA (NA)					noncoding (20/26 nt)	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences

AAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3898532‑3898636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGAT  <  NC_000913/3898650‑3898554                                                                                                                                                                                                            AAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGG                                                                                                        <  2:2247269/100‑1    GGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCG                                                                                                     <  2:1130164/100‑1     GTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGG                                                                                                    >  1:1703479/1‑100     GTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGG                                                                                                    <  2:287976/100‑1        ggCATTGTCAGGGTTATCTCTTCCGCGGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGG                                                                                                    <  2:1478836/95‑1                           CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCn                                                                              <  1:699232/100‑2                           CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                              <  1:1137004/100‑1                           CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                              <  1:742688/100‑1                            TTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCT                                                                             <  1:1647929/100‑1                             TCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTG                                                                            <  2:23903/100‑1                              CCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT                                                                           <  1:661464/100‑1                              CCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT                                                                           <  2:1311735/100‑1                              CCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATCTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT                                                                           <  1:88207/100‑1                                   GTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCA                                                                      <  2:66794/100‑1                                   GTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCA                                                                      >  2:1497406/1‑100                                                 AAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACT                                                        <  1:1497414/100‑1                                                       AGACTGTGGGGCGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAA                                                  <  1:1905367/100‑1                                                                                                  AGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAA       <  2:1153231/100‑1                                                                                                  AGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAA       >  2:1333738/1‑100                                                                                                   GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG      >  1:2567133/1‑100                                                                                                   GGCCGGATGTGTGAATTACGCTCAGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCGGTGGAGACAGCGGAAG      >  1:482755/1‑100                                                                                                    GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA     >  1:616345/1‑100                                                                                                    GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA     >  2:788891/1‑100                                                                                                    GCCGGATGTGTGAATTACGCTCCGACCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA     <  1:1776176/100‑1                                                                                                     CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACGGCGGAAGAG    <  1:2404134/100‑1                                                                                                     CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG    <  2:378678/100‑1                                                                                                       GGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGAT  >  2:323878/1‑100                                                                                                                                                                                                            AAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3898532‑3898636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGAT  <  NC_000913/3898650‑3898554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.