| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3908387 = | NA (NA) | 8 (0.090) | 6/164 | NT | NA | noncoding (1/64 nt) | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3908412 = | NA (NA) | noncoding (26/64 nt) | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3908490‑3908387‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGG > NC_000913/3908412‑3908509 GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATC < 2:985804/100‑1GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATC < 2:2239651/100‑1GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATC < 1:2374374/100‑1GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATC < 2:2240941/100‑1GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATC > 1:1941103/1‑100GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATC < 1:1424702/100‑1GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATC > 2:84855/1‑100 CCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAG < 2:1849493/100‑1 CCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAG > 2:1743766/1‑100 CGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGG < 2:228352/100‑1 CGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGG > 2:573622/1‑100 GAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGC < 1:1170666/100‑1 GAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGC > 1:2442704/1‑100 GAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGC < 2:1720252/100‑1 GAGCGCCTTTCTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCTTAGGGTAAGCCTGATTAGCGAAGTGCATCAGGC < 2:1708574/100‑1 GGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTC > 1:324724/1‑100 TACGGTAAGCCTGATTAGCGAAGTGCATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAA > 1:1037876/1‑100 CGGTAAGCCTGATTAGCGAAGTGCATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAG > 1:857399/1‑100 CGGTAAGCCTGATTAGCGAAGTGCATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGAACAGAGTCAAAAAG > 1:2089306/1‑100 GTAAGCCTGATTAGCGAAGTGCATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGC > 2:1887736/1‑100 TAAGCCTGATTAGCGAAGTGCATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCG > 1:1700539/1‑100 AAGCCTGATTAGCGAAGTGCATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGC > 1:2465421/1‑100 AAGCCTGATTAGCGAAGTGCATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGC > 2:2599267/1‑100 ATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCC < 2:275199/100‑1 ATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCC > 2:738879/1‑100 TCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCT > 1:1352298/1‑100 GGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTG < 2:1459196/100‑1 GGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTG > 1:1119316/1‑100 GCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAATGCGCTCGGTCGGTCCCCTCGCCCCGCTGG > 1:1031650/1‑100 GACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3908490‑3908387‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGG > NC_000913/3908412‑3908509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |